Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P15
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   2.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   8.0  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   8.0  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = -2

Query: 141 CDPRTGHLRPALLTRFIXLPXLEXXPCTRDIESKIXXXPYSEXVM 7
           C    G L  ALL  F+    +   PC R   S+I    Y   V+
Sbjct: 30  CSASNGELFLALLNFFVATSPVIGEPCQRVHSSRIPDLSYDFIVV 74


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 250 SSLCTFPGGTCRYQRRKHARTACR 179
           SS+  +   T +Y  R HA  AC+
Sbjct: 94  SSVTLYRNKTVKYSARMHAIIACQ 117


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 263 YSXPILFVHFPGGYLSIPATKACPY 189
           YS   L   FP GY  + A K+  Y
Sbjct: 28  YSWKALEFAFPNGYAKLAAIKSGSY 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,571
Number of Sequences: 438
Number of extensions: 3314
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)