Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P15
         (832 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            65   6e-11
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            62   6e-10
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    61   1e-09

>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +3

Query: 99  G*VVLVLSGRYAGRKAIVVKXLRRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRIXSTKR 278
           G  V++L GRY G+KA++VK        +    C     ++ P   + K+   +  + K+
Sbjct: 8   GKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKK--TAKK 65

Query: 279 SR*AFRERL*TYNHLMPPVIQLTSPLKNF-SAKXPERPCKR*EAAFXHASRFEERYKSGK 455
           SR     ++  Y H+MP    L   LKN  SA       K+  A     ++FEER+K+GK
Sbjct: 66  SRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEERFKTGK 125

Query: 456 NKWFF 470
           N+WFF
Sbjct: 126 NRWFF 130



 Score = 35.9 bits (79), Expect = 0.033
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 157 RXYDEGTSDKPYGHAFVAGIDRYP 228
           + +D+GT +K YGH  VAG+ +YP
Sbjct: 27  KSFDDGTVEKKYGHCLVAGLKKYP 50


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
 Frame = +3

Query: 108 VLVLSGRYAGRKAIVVKXLRRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRIXSTKRSR* 287
           V++L GRYAG+KA+++K        +    C     ++ P   + K+   +  + K+SR 
Sbjct: 11  VILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKK--TAKKSRV 68

Query: 288 AFRERL*TYNHLMPPVIQLTSPLKNFSAKXPERPCKR*EAAFXHA-SRFEERYKSGKNKW 464
               +L  Y HLMP    L   LK  +     +   +  AA   A ++ EER+K+GKN+W
Sbjct: 69  KCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEERFKTGKNRW 128

Query: 465 FF 470
           FF
Sbjct: 129 FF 130



 Score = 38.3 bits (85), Expect = 0.006
 Identities = 16/48 (33%), Positives = 28/48 (58%)
 Frame = +1

Query: 157 RXYDEGTSDKPYGHAFVAGIDRYPPGKCTKRMGXE*XPQRGPDKPFVK 300
           + +D+G  D+PYGH  VAG+ +Y P K  ++   +   ++   K F+K
Sbjct: 27  KSFDDGNRDRPYGHCLVAGLKKY-PSKVIRKDSAKKTAKKSRVKCFIK 73


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
 Frame = +3

Query: 108 VLVLSGRYAGRKAIVVKXLRRRYFRQAVRACFRRWYRQVPPGKVHKEDGXRIXSTKRSR* 287
           V++L GRYAG+KA+++K        +    C     ++ P   + K+   +  + K+SR 
Sbjct: 11  VILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKK--TAKKSRV 68

Query: 288 AFRERL*TYNHLMPPVIQLTSPLKNFSAKXPERPCKR*EAAFXHA-SRFEERYKSGKNKW 464
               +L  Y HLMP    L   LK  +     +   +   A   A ++ EER+K+GKN+W
Sbjct: 69  KCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEERFKTGKNRW 128

Query: 465 FF 470
           FF
Sbjct: 129 FF 130



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +1

Query: 157 RXYDEGTSDKPYGHAFVAGIDRYPPGKCTKRMGXE*XPQRGPDKPFVK 300
           + +D+GTSD+ YGH  VAG+ +Y P K  ++   +   ++   K F+K
Sbjct: 27  KSFDDGTSDRRYGHCLVAGLKKY-PSKVIRKDSAKKTAKKSRVKCFIK 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,151,718
Number of Sequences: 28952
Number of extensions: 219483
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)