BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= MFBP04_F_P13 (895 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.077 SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1 SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 29 6.7 SB_59302| Best HMM Match : Collagen (HMM E-Value=0) 28 8.9 >SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 290 Score = 35.1 bits (77), Expect = 0.077 Identities = 15/42 (35%), Positives = 16/42 (38%) Frame = +3 Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893 PP PPP NA + P P PP P P PP Sbjct: 164 PPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPP 205 Score = 28.3 bits (60), Expect = 8.9 Identities = 14/42 (33%), Positives = 15/42 (35%) Frame = +3 Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893 PP PPP NA + P PP P P PP Sbjct: 130 PPYPPPPNAPYPP-SPNAPYPPPPNPPYPPPLYPPPPNPPPP 170 >SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 4072 Score = 29.1 bits (62), Expect = 5.1 Identities = 14/40 (35%), Positives = 15/40 (37%) Frame = +2 Query: 773 PXPPGKRXXSXXGXPXPXSPPXXTXXXPXXXXPXXXXXPP 892 P PPG R + G P P PP P P PP Sbjct: 3797 PGPPG-RSKNISGPPGPQGPPGQASQIPGPPGPQGPPGPP 3835 >SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) Length = 457 Score = 28.7 bits (61), Expect = 6.7 Identities = 15/51 (29%), Positives = 16/51 (31%) Frame = +3 Query: 741 PVXSXXSXTPPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893 P S PP PPP + P P PP P P PP Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421 Score = 28.3 bits (60), Expect = 8.9 Identities = 13/42 (30%), Positives = 14/42 (33%) Frame = +3 Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893 PP PPP + P P PP P P PP Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422 >SB_59302| Best HMM Match : Collagen (HMM E-Value=0) Length = 993 Score = 28.3 bits (60), Expect = 8.9 Identities = 12/27 (44%), Positives = 12/27 (44%) Frame = +3 Query: 765 TPPXPPPXNAXFXXLXXPXPXXPPXXP 845 TPP PPP A P P PP P Sbjct: 28 TPPPPPPYEAPPPPPGPPGPDGPPGFP 54 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,451,425 Number of Sequences: 59808 Number of extensions: 249782 Number of successful extensions: 659 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 508 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 621 length of database: 16,821,457 effective HSP length: 82 effective length of database: 11,917,201 effective search space used: 2562198215 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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