Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P13
         (895 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.077
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)                  29   6.7  
SB_59302| Best HMM Match : Collagen (HMM E-Value=0)                    28   8.9  

>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 35.1 bits (77), Expect = 0.077
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +3

Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           PP PPP NA +     P P  PP  P   P          PP
Sbjct: 164 PPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPP 205



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = +3

Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           PP PPP NA +       P  PP  P   P          PP
Sbjct: 130 PPYPPPPNAPYPP-SPNAPYPPPPNPPYPPPLYPPPPNPPPP 170


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/40 (35%), Positives = 15/40 (37%)
 Frame = +2

Query: 773  PXPPGKRXXSXXGXPXPXSPPXXTXXXPXXXXPXXXXXPP 892
            P PPG R  +  G P P  PP      P    P     PP
Sbjct: 3797 PGPPG-RSKNISGPPGPQGPPGQASQIPGPPGPQGPPGPP 3835


>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
          Length = 457

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +3

Query: 741 PVXSXXSXTPPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           P     S  PP PPP  +       P P  PP  P   P          PP
Sbjct: 371 PPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPP 421



 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +3

Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           PP PPP +        P P  PP  P   P          PP
Sbjct: 381 PPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPP 422


>SB_59302| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 993

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 765 TPPXPPPXNAXFXXLXXPXPXXPPXXP 845
           TPP PPP  A       P P  PP  P
Sbjct: 28  TPPPPPPYEAPPPPPGPPGPDGPPGFP 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,451,425
Number of Sequences: 59808
Number of extensions: 249782
Number of successful extensions: 659
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2562198215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)