Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P13
         (895 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / sta...    31   0.78 
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    29   3.1  
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    29   5.5  

>At2g36390.1 68415.m04466 1,4-alpha-glucan branching enzyme / starch
           branching enzyme class II (SBE2-1) nearly identical to
           starch branching enzyme class II [Arabidopsis thaliana]
           GI:619939
          Length = 858

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -3

Query: 248 MIFIHNFHWINAGGDFAIG-TVPAVF-LRVDSYN 153
           ++F+ NFHW N+  D+ IG +VP  + + +DS N
Sbjct: 760 LLFVFNFHWTNSYSDYRIGCSVPGKYKIVLDSDN 793


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +3

Query: 741 PVXSXXSXTPPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           P  S  S TPP  PP       +  P P   P  P   P          PP
Sbjct: 86  PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 136



 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +3

Query: 741 PVXSXXSXTPPXPPPXNAXFXXLXXPXPXXPPXXPXXXPXXXXXXXTXXPP 893
           P  S  S TPP  PP       +  P P   P  P   P          PP
Sbjct: 104 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPP 154



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +3

Query: 741 PVXSXXSXTPPXPPPXNAXFXXLXXPXPXXPPXXPXXXP 857
           P  S  S TPP  PP       +  P P   P  P   P
Sbjct: 122 PTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTP 160


>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 768 PPXPPPXNAXFXXLXXPXPXXPPXXP 845
           PP PPP    F     P P  PP  P
Sbjct: 47  PPPPPPPPLYFSYFSLPPPPPPPHLP 72


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,870,679
Number of Sequences: 28952
Number of extensions: 199368
Number of successful extensions: 881
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2100696768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)