Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P11
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 117 3e-27
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 29 0.68
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 28 2.1
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 3.6
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 4.8
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 4.8
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.3
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 8.4
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 117 bits (281), Expect = 3e-27
Identities = 58/117 (49%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 252
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSR +
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTL 120
Score = 65.7 bits (153), Expect = 8e-12
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +3
Query: 471 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 136 EIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
Score = 32.3 bits (70), Expect = 0.096
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Frame = +2
Query: 389 LTNKRGHAQGTLTSVYDAILEDLVFP----G*DRRQAHQGQ 499
+T KR ++ TLT+V++AILED+VFP G RQA G+
Sbjct: 110 VTQKRPRSR-TLTAVHNAILEDIVFPTEIIGKRTRQATDGR 149
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 29.5 bits (63), Expect = 0.68
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Frame = +1
Query: 25 GNS*DLLFPSRKVVKMSTKIIKASGAEADSFETSISQALVEL-ETNSDLKAQLREL-YIT 198
GN P R ++K ST + SFE + S+ L E S + + L ++
Sbjct: 53 GNRPSFGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVE 112
Query: 199 KAKEIELHNKKSIIIYVPMPKL 264
K+ IE ++K S + + P L
Sbjct: 113 KSARIETYSKLSSFLKIYTPSL 134
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 465 LAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYXKLTGREVTFEFP 629
L++ +GK+ ++ ++L VHL + TIE + F Q+V + T +F+ P
Sbjct: 578 LSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLP 633
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -2
Query: 371 LGLGRILRSPTKTTCLPLNFFSSSRTS 291
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +2
Query: 344 ETVRSCLSPATKPVLLTNKRGHAQ 415
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 241 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 333
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = -3
Query: 538 LSKCTLMSCEPSNLTLMRLPTISAREDQVL---EDSIVHRGQCPLSVASFV 395
+S L+S + +L+ + IS+ + Q +D+I H QC LS +SFV
Sbjct: 91 ISHPQLVSANGDDSSLINVEGISSTDWQFTLESDDTIEHSPQCILSTSSFV 141
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 358 LPKPSHKTRVANKQKRPRSRDIDLCVRCYPRGL 456
L S +T V ++++ R++D C C RGL
Sbjct: 96 LETESQQTPVKRRRRKATIRNVDYCSACGGRGL 128
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,157
Number of Sequences: 5004
Number of extensions: 54004
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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