Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P11
(897 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 100 1e-21
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 86 4e-17
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 55 7e-08
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 29 3.8
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 6.6
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 6.6
03_02_0488 - 8824980-8825267,8825364-8827775 29 6.6
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 100 bits (240), Expect = 1e-21
Identities = 54/117 (46%), Positives = 79/117 (67%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 252
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KAF+KI +RLVRELEKKFSGK VV V R+I+ P + V +RPR+R +
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTL 119
Score = 68.9 bits (161), Expect = 5e-12
Identities = 28/54 (51%), Positives = 43/54 (79%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKRIR +LDG+++IK+ LD ++ E+K++TF +VY +L G++V FE+P
Sbjct: 134 AEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRRLCGKDVAFEYP 187
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLT+V+D ILED+V+P
Sbjct: 97 ATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYP 133
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 85.8 bits (203), Expect = 4e-17
Identities = 48/99 (48%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +1
Query: 133 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 306
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 307 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
EKKFSGK VV V R+I+ P + V RPR+R +
Sbjct: 98 EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTL 132
Score = 67.3 bits (157), Expect = 2e-11
Identities = 27/54 (50%), Positives = 41/54 (75%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR+R LDG +++K+ LD ++ E+K+DTF SVY +L G++V F++P
Sbjct: 147 AEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYP 200
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLT+V+D ILED+V+P
Sbjct: 110 ATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYP 146
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 55.2 bits (127), Expect = 7e-08
Identities = 32/79 (40%), Positives = 49/79 (62%)
Frame = +1
Query: 187 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 366
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK VVF R+I+ +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88
Query: 367 PSHKTRVANKQKRPRSRDI 423
P +K + PR+R +
Sbjct: 89 PLNKGSAVH---HPRTRTL 104
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 401 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 285
F L A+ L L L +L T CLPL FF+ + SL+
Sbjct: 4 FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 6.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +1
Query: 139 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 273
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 6.6
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 139 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 273
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +1
Query: 88 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 264
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 265 KAFQKI 282
+ +++
Sbjct: 359 DSSEEL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,139
Number of Sequences: 37544
Number of extensions: 358711
Number of successful extensions: 877
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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