Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P11
(897 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 105 5e-23
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 105 5e-23
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 100 3e-21
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 94 1e-19
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 94 1e-19
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 28 7.3
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 9.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 105 bits (251), Expect = 5e-23
Identities = 55/117 (47%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 252
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+R +
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTL 119
Score = 64.9 bits (151), Expect = 7e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR R +LDG++++KV LD + E+K++T VY KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLTSV++A+LED+ +P
Sbjct: 97 ATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYP 133
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 105 bits (251), Expect = 5e-23
Identities = 55/117 (47%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 252
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+R +
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTL 119
Score = 64.9 bits (151), Expect = 7e-11
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR R +LDG++++KV LD + E+K++T VY KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYP 187
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLTSV++A+LED+ +P
Sbjct: 97 ATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYP 133
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 99.5 bits (237), Expect = 3e-21
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 252
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+R +
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTL 119
Score = 67.7 bits (158), Expect = 1e-11
Identities = 29/54 (53%), Positives = 41/54 (75%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR R +LDGS+++KV LD ++ E+K++T VY KLTG++V FE+P
Sbjct: 134 AEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYP 187
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +2
Query: 347 TVRSCLSPATKPVLLTNKRGHAQGTLTSVYDAILEDLVFP 466
T R + P K + R TLTSV++A+LED+ FP
Sbjct: 97 TTRRIMRPPKKGAAVQRPRNR---TLTSVHEAMLEDVAFP 133
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.9 bits (223), Expect = 1e-19
Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 252
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+R +
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTL 119
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VY KLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLTSV++AIL+D+V P
Sbjct: 97 ATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLP 133
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 93.9 bits (223), Expect = 1e-19
Identities = 49/117 (41%), Positives = 77/117 (65%), Gaps = 2/117 (1%)
Frame = +1
Query: 79 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 252
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 253 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRDI 423
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+R +
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTL 119
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/54 (55%), Positives = 42/54 (77%)
Frame = +3
Query: 468 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYXKLTGREVTFEFP 629
AEIVGKR R +LDG++++KV LD ++ E+KV+ F +VY KLTG++V FEFP
Sbjct: 134 AEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFP 187
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Frame = +2
Query: 371 ATKPVLLTNKRGHA-----QGTLTSVYDAILEDLVFP 466
AT+ ++ K+G A TLTSV++AIL+D+V P
Sbjct: 97 ATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLP 133
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 28.3 bits (60), Expect = 7.3
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 55 RKVVKMSTKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHN 225
+ +++ T +KA SF+ I + +EL T+ DL+ E EI EL
Sbjct: 547 KALIRELTSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSK 606
Query: 226 KKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSG 324
K + V + KA ++ L K +G
Sbjct: 607 KVVDLTSVAQGEKKAVHDAKVELAAAYSKLLAG 639
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 9.7
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 214 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 363
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,854,256
Number of Sequences: 28952
Number of extensions: 290852
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2110422216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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