Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_P10
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 62 1e-10
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 62 1e-10
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 28 1.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 6.1
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 8.1
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 8.1
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 8.1
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|... 26 8.1
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 62.1 bits (144), Expect = 1e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 231 NWFYVRCAAILRHIYIRSPVW-SQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLE 407
+W+YVR AAI RHIY+R V + C ++ + + S+ RK +QSLE
Sbjct: 51 DWYYVRAAAIARHIYLRKQVGVGRLCK--VYGGSVNRGMRPSHHRDGSGSVQRKVVQSLE 108
Query: 408 ALKLVEKVQDGGRILTTQGRRDLDRIA 488
+ ++EK +GGR ++ QG+RDLDRIA
Sbjct: 109 KIGVLEKSDNGGRRISQQGQRDLDRIA 135
Score = 42.3 bits (95), Expect = 9e-05
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
+ AA L ++GK+ P+ +D+VK KELAPYDP+
Sbjct: 15 INAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPD 51
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 62.1 bits (144), Expect = 1e-10
Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Frame = +3
Query: 231 NWFYVRCAAILRHIYIRSPVW-SQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLE 407
+W+YVR AAI RHIY+R V + C ++ + + S+ RK +QSLE
Sbjct: 51 DWYYVRAAAIARHIYLRKQVGVGRLCK--VYGGSVNRGMRPSHHRDGSGSVQRKVVQSLE 108
Query: 408 ALKLVEKVQDGGRILTTQGRRDLDRIA 488
+ ++EK +GGR ++ QG+RDLDRIA
Sbjct: 109 KIGVLEKSDNGGRRISQQGQRDLDRIA 135
Score = 41.9 bits (94), Expect = 1e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +2
Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
+ AA L ++GK+ P+ +D+VK KELAPYDP+
Sbjct: 15 ITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPD 51
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +3
Query: 261 LRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEALKLVEKVQDG 440
+R IY R +W D H + + ++ + H I A+ + +V+K++D
Sbjct: 479 VRRIYARLELWKSDLHSSVVFDESAVQHPLFRSNAHVQMIYDNAIMLTTRVIMVKKLKD- 537
Query: 441 GRILTTQGRR 470
+ LT + RR
Sbjct: 538 -KDLTAENRR 546
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = -2
Query: 413 QCLQRLQSLACNTALMTLQKCEGVTPLRLRPPKILVTVLTPNR*ANVNMTKDGSTTHIEP 234
+C R QSL +L L +G+T L P +++ + ++ + TH+
Sbjct: 527 ECFIRPQSLKLKVSLKDLDMFDGITNPELEPARVIFAKPSVEESESLQKIPEAYRTHLFF 586
Query: 233 IQGHTEP 213
+ T+P
Sbjct: 587 LLLDTKP 593
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 296 SRLSPRSLVGANVMELHLHISAGSSXQYCTQGFAIV 403
S+ S SL+ NVM+ +L +A + + T GF +V
Sbjct: 648 SKQSVNSLLDENVMKTNLDTNANLAKKKSTAGFVLV 683
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 299 RLSPRSLVGANVMELHLHISAGSSXQYCT 385
++SPRS NV + +++ + S QYC+
Sbjct: 491 QISPRSSANINVKKPGIYVLSSVSSQYCS 519
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 8.1
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 321 WAQT*WSYTFTFLQGHQXSIA 383
+++T WS TFTF++G S++
Sbjct: 54 YSKTQWSKTFTFVRGRTVSVS 74
>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 452 ENATTVLNFLNKLQCLQRLQSLACNTALMTLQKC 351
EN+T ++ ++ LQ L S A++ L+KC
Sbjct: 122 ENSTIIIEDIDILQSTHALDSTKIQQAILELRKC 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,034,679
Number of Sequences: 5004
Number of extensions: 33202
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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