Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P10
         (876 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...    56   4e-08
05_05_0116 - 22496535-22496576,22496974-22497058,22497468-224975...    30   2.8  
11_06_0291 + 22008412-22012284                                         29   6.5  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score = 56.0 bits (129), Expect = 4e-08
 Identities = 30/89 (33%), Positives = 50/89 (56%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +W+Y R A+I R IY+R  +      +     Q   S    F +    +I+R  LQ L+ 
Sbjct: 54  DWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKS-SGAISRNILQQLQK 112

Query: 411 LKLVEKVQDGGRILTTQGRRDLDRIAAQV 497
           + +++    GGR++T+QGRRDLD++A +V
Sbjct: 113 MGIIDVDPKGGRLITSQGRRDLDQVAGRV 141



 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 22/37 (59%), Positives = 31/37 (83%)
 Frame = +2

Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           VK  +AHL ++GK+++PE +D+VK ARFKEL PYDP+
Sbjct: 18  VKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPD 54


>05_05_0116 -
           22496535-22496576,22496974-22497058,22497468-22497545,
           22497656-22497803,22498612-22498771,22499056-22499058
          Length = 171

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +3

Query: 384 RKALQSLEALKL-VEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQXVIVLXFYAN 557
           R AL++L+ + L ++++ DGG +L T+G    ++++A     A   A+Q + +L    N
Sbjct: 110 RTALENLDLILLCLDEIVDGGIVLETEGSVIAEKVSAHGIEGATSLAEQWINILLMEMN 168


>11_06_0291 + 22008412-22012284
          Length = 1290

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 479  VKVSSTLCGENATTVLNFLNKLQCLQRLQSLACNTALMTLQK 354
            V +SST   ++   VL  L KLQC+ RL+ ++C  +++  +K
Sbjct: 1168 VTLSSTQLNQDDLEVLAKLPKLQCV-RLRHISCTESMLIFKK 1208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,602
Number of Sequences: 37544
Number of extensions: 241084
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)