Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P10
         (876 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)          56   5e-08
SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        29   4.9  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        29   4.9  
SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
          Length = 92

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +3

Query: 375 SIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQV 497
           S+AR  L+ LE +KLVEK   GGR +T+QG+RD+DRIA+Q+
Sbjct: 52  SVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRIASQI 92



 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%)
 Frame = +2

Query: 152 TGKVKVPEHMDLVKXARFKELAPYDPE 232
           +G +K+P+ +DLVK  +FKELAPYDP+
Sbjct: 2   SGNLKIPDWVDLVKTGKFKELAPYDPD 28


>SB_49816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 378 IARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLK 506
           IA   LQ   A+  V ++     +++T GRR+LDR  A++  K
Sbjct: 80  IAPNGLQYCVAMMAVSRIGACAVLMSTSGRRELDRFTAELLRK 122


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 262 FVIFTFAHLFGVKTVTKIFGGRKRNGVTPSHFCRVIXAVLHARLCNRWRH 411
           FV  T  H F  + +T+ F  +   G  P  FCR +       +C+   H
Sbjct: 163 FVTNTHHHRFSSRALTRPFCFKNTTGTKPKFFCRPLNVPETKHICSNRVH 212


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 306  DSLDSKQVSECKYDEGWQHNAHRTNSG 226
            DS+  K+V+ CK +E W  + H T  G
Sbjct: 996  DSVSGKEVTSCKKNETWIADCHFTRDG 1022


>SB_39948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 727

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = -1

Query: 348 RCNSITFAPTKDLGDSLDSKQVSECKYDEGWQHNAH---RTNSGSYGASSLKRAXFTRSM 178
           R     F P  D G   D+K+  +  Y+  ++HN       N+     S +K A    S 
Sbjct: 462 RARECIFWPVSDGGPQFDAKEFEDFAYEWDFEHNLSSPGHPNANGKVESGVKAAKAMLSK 521

Query: 177 CSGTLTLP 154
           C+   T P
Sbjct: 522 CAQDKTDP 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,081,954
Number of Sequences: 59808
Number of extensions: 282074
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2490695009
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)