Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P10
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...    64   1e-10
U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           36   0.050
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    36   0.050
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    36   0.050
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    36   0.050

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +WFY R A++ RH+Y R         + ++             Q    +  RKA+Q LE 
Sbjct: 52  DWFYTRAASLARHLYFRPA--GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEK 109

Query: 411 LKLVEKVQDG-GRILTTQGRRDLDRIAAQVRLKAKQ 515
           +K VEK  DG GRIL+ QGR+DLDRIA  +R   +Q
Sbjct: 110 IKWVEKHPDGKGRILSKQGRKDLDRIATSLRSSGQQ 145



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 125 KTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           K++A  L K+GKVKVPE  DLVK    KELAP DP+
Sbjct: 17  KSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPD 52


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +WFY R A++ RH+Y R         + ++             Q    +  RKA+Q LE 
Sbjct: 52  DWFYTRAASLARHLYFRPA--GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEK 109

Query: 411 LKLVEKVQDG-GRILTTQGRRDLDRIAAQVRLKAKQ 515
           +K VEK  DG GRIL+ QGR+DLDRIA  +R   +Q
Sbjct: 110 IKWVEKHPDGKGRILSKQGRKDLDRIATSLRSSGQQ 145



 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = +2

Query: 125 KTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           K++A  L K+GKVKVPE  DLVK    KELAP DP+
Sbjct: 17  KSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPD 52


>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 230 ELVLCALCCHPSSYLHSLTCLESRLSPRSLVGANVMELHLHISAGSSXQYCTQGFAIVGG 409
           + ++ A C  P  Y HS+T   S + P ++     +E   HI +    +YC  G A + G
Sbjct: 682 DFIMTAKCVCPDGYTHSVT-ENSCIPPVTIEDEENLEKLSHIGSALMAEYCEAGVACMNG 740

Query: 410 IEAC*ESSGRWSHSH 454
             AC E       +H
Sbjct: 741 -GACRELQNEHGRAH 754


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 230 ELVLCALCCHPSSYLHSLTCLESRLSPRSLVGANVMELHLHISAGSSXQYCTQGFAIVGG 409
           + ++ A C  P  Y HS+T   S + P ++     +E   HI +    +YC  G A + G
Sbjct: 682 DFIMTAKCVCPDGYTHSVT-ENSCIPPVTIEDEENLEKLSHIGSALMAEYCEAGVACMNG 740

Query: 410 IEAC*ESSGRWSHSH 454
             AC E       +H
Sbjct: 741 -GACRELQNEHGRAH 754


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 230 ELVLCALCCHPSSYLHSLTCLESRLSPRSLVGANVMELHLHISAGSSXQYCTQGFAIVGG 409
           + ++ A C  P  Y HS+T   S + P ++     +E   HI +    +YC  G A + G
Sbjct: 682 DFIMTAKCVCPDGYTHSVT-ENSCIPPVTIEDEENLEKLSHIGSALMAEYCEAGVACMNG 740

Query: 410 IEAC*ESSGRWSHSH 454
             AC E       +H
Sbjct: 741 -GACRELQNEHGRAH 754


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = +2

Query: 230 ELVLCALCCHPSSYLHSLTCLESRLSPRSLVGANVMELHLHISAGSSXQYCTQGFAIVGG 409
           + ++ A C  P  Y HS+T   S + P ++     +E   HI +    +YC  G A + G
Sbjct: 682 DFIMTAKCVCPDGYTHSVT-ENSCIPPVTIEDEENLEKLSHIGSALMAEYCEAGVACMNG 740

Query: 410 IEAC*ESSGRWSHSH 454
             AC E       +H
Sbjct: 741 -GACRELQNEHGRAH 754


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,094
Number of Sequences: 27780
Number of extensions: 202444
Number of successful extensions: 505
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)