Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P10
         (876 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ...    52   4e-07
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi...    52   4e-07
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ...    49   4e-06
At4g16095.1 68417.m02440 disease resistance protein-related cont...    30   2.3  
At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containi...    29   5.4  
At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family...    28   9.4  

>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
           RIBOSOMAL PROTEIN S19 - Oryza sativa,
           SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 29/89 (32%), Positives = 49/89 (55%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +W+Y+R A++ R IY+R  +      +    ++   S    F +     IAR  LQ LE 
Sbjct: 52  DWYYIRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKS-SGGIARHILQQLET 110

Query: 411 LKLVEKVQDGGRILTTQGRRDLDRIAAQV 497
           + +VE    GGR +T+ G+RDLD++A ++
Sbjct: 111 MSIVELDTKGGRRITSSGQRDLDQVAGRI 139



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +2

Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           VK  A+HL ++GK+++P   D+VK  R KELAPYDP+
Sbjct: 16  VKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPD 52


>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
           to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
          Length = 143

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 28/92 (30%), Positives = 51/92 (55%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +W+Y+R A++ R +Y+R  +      +    ++   S    F +     IAR  LQ LE 
Sbjct: 52  DWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKS-SGGIARHILQQLET 110

Query: 411 LKLVEKVQDGGRILTTQGRRDLDRIAAQVRLK 506
           + +VE    GGR +T+ G+RDLD++A ++ ++
Sbjct: 111 MNIVELDTKGGRRITSSGQRDLDQVAGRIAVE 142



 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           VK  A+HL ++GK+++P   D+VK  + KELAPYDP+
Sbjct: 16  VKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPD 52


>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
           ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
          Length = 143

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 20/37 (54%), Positives = 28/37 (75%)
 Frame = +2

Query: 122 VKTVAAHLXKTGKVKVPEHMDLVKXARFKELAPYDPE 232
           VK  AAHL ++GK+++P   D+VK  + KELAPYDP+
Sbjct: 16  VKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPD 52



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 25/89 (28%), Positives = 49/89 (55%)
 Frame = +3

Query: 231 NWFYVRCAAILRHIYIRSPVWSQDCHQDLWWAQT*WSYTFTFLQGHQXSIARKALQSLEA 410
           +W+Y+R A++ R +Y+R  +      +    ++   S    F +     +AR  LQ L+ 
Sbjct: 52  DWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKS-SGGVARHILQQLQT 110

Query: 411 LKLVEKVQDGGRILTTQGRRDLDRIAAQV 497
           + +V+    GGR +T+ G+RDLD++A ++
Sbjct: 111 MNIVDLDTKGGRKITSSGQRDLDQVAGRI 139


>At4g16095.1 68417.m02440 disease resistance protein-related
           contains weak similarity to rpp8 [Arabidopsis thaliana]
           gi|3901294|gb|AAC78631
          Length = 187

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -1

Query: 441 HRPELSQQASMPPTIAKPCVQYC--XDDP 361
           H P L  Q   PP +   C++YC   DDP
Sbjct: 86  HMPRLPDQHRFPPNLTNICLRYCCMEDDP 114


>At1g62260.1 68414.m07024 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 656

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 313 IFGGRKRNGVTPSH--FCRVIXAVLHARL 393
           +FG  K NG+ PSH  F  V+ A  HA L
Sbjct: 497 LFGSMKSNGIYPSHITFVSVLNACAHAGL 525


>At1g18480.1 68414.m02306 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 391

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = +3

Query: 387 KALQSLEALKLVEKVQDGGRILTTQGRRDLDRIAAQVRLKAKQQAKQXVIVLXFYANXN 563
           K L  LE LK  E  + GG+ILT  G  ++  I    R   K+  ++  I   +Y   N
Sbjct: 107 KILYFLEKLKR-EAERAGGKILTMNGNHEIMNIEGDFRYVTKKGLEEFQIWADWYCLGN 164


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,111
Number of Sequences: 28952
Number of extensions: 186058
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2058178400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)