Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P09
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    27   4.4  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    26   5.8  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 630 KPPSCALLFRPXPXTXYLSXFLPFGKA 710
           +PPS ++L    P   +LS F+  GKA
Sbjct: 24  EPPSSSILINTRPVNPFLSTFVYVGKA 50


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 96  IDTLMSLDQPQLECSXKNCFYL*TFVMLFAFI 191
           I T++   QP LE S +      TF +LFAFI
Sbjct: 651 IPTVLPPTQPVLEPSYREIVAFITFFLLFAFI 682


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,841
Number of Sequences: 5004
Number of extensions: 50204
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)