Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P09
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 59  GSPLXRVIWIRHDRYIDEFGP 121
           G PL RV W+++D  ++   P
Sbjct: 427 GEPLPRVQWLKNDEALNHDQP 447


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 396  SPQPNDRAQRVSERGSXRAPNTQTASSRAFGRFINAEKTSPHL 268
            SP P+DR +         +P T  + SRA  R  ++ + S  L
Sbjct: 1378 SPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDSTKL 1420


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 50 RGRGSPLXRVIWIRHD 97
          + RG+P   +IW+R D
Sbjct: 26 QARGNPQPDIIWVRAD 41


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 12/37 (32%), Positives = 14/37 (37%)
 Frame = +1

Query: 583 WRNPTGX*RYQAFPPGNLPXALSCSDPXRLPXTCPPF 693
           + NP    RYQ  P G +   L      RL    P F
Sbjct: 91  YENPDEEKRYQEHPNGKILRELQTDYDRRLHDNSPSF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,631
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)