Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P08
         (1004 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    37   0.020
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    29   6.9  

>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 37.1 bits (82), Expect = 0.020
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +3

Query: 429 DXHXXSXPHFGIXEEMLXDDVRTXTXKNA 515
           D +  S  HFGI EEML D+VRT T +N+
Sbjct: 25  DYYFDSYAHFGIHEEMLKDEVRTTTYRNS 53


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 732 LPRPXXTLXSKGHRWXXRLPXPTFXPPRXPHNYP 833
           LP+P     S    +   LP PT+ PP  P   P
Sbjct: 176 LPQPTPEFQSSSSGFSPMLPAPTYSPPSLPSESP 209


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,620,052
Number of Sequences: 27780
Number of extensions: 103631
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2636483976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)