Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P07
         (873 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr...   177   2e-45
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   6.1  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   6.1  

>SPCC1020.06c |tal1||transaldolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 322

 Score =  177 bits (431), Expect = 2e-45
 Identities = 98/199 (49%), Positives = 121/199 (60%), Gaps = 1/199 (0%)
 Frame = +1

Query: 97  ALDXLKXX-SXVVAXXGXFEAXKXXKPTDATTNPSLILSAAGMEXYQHXLDKAIKYGKXN 273
           +L+ LK   + VV+  G FE+    KP DATTNPSLIL+A+    Y   +D A+ Y K  
Sbjct: 3   SLEQLKATGTVVVSDTGDFESIAKYKPQDATTNPSLILAASKKPQYAALVDAAVDYAKAK 62

Query: 274 GXSIEXXVAETLDMLSVLFGCEILKIIPGRVSVEVXAXLSFDKDASXAXAIKFIXLFAEH 453
           G SI   +    D L + FG +IL I+PGRVS EV A  SFD   +   A   I L+   
Sbjct: 63  GGSINSQIEIAFDRLLIEFGTKILAIVPGRVSTEVDARYSFDTQTTIEKARHLIKLYEAE 122

Query: 454 GIKXEXILIKLASTWEGIQAAXELEXKHGIHCNLTLLFSLYXAIACAEAHVTLXSPFVGX 633
           GI  E +LIK+AST+EGIQAA +LE + GIHCNLTLLFS   A+ACAEA+VTL SPFVG 
Sbjct: 123 GIGRERVLIKIASTYEGIQAAKQLE-EEGIHCNLTLLFSFVQAVACAEANVTLISPFVGR 181

Query: 634 ILDWXVXHXXXXYEAXXXP 690
           ILD+        Y A   P
Sbjct: 182 ILDFYKAKNNRDYTAQEDP 200


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 339 FTPKKHTQHIQSFSHXXFNGAXIXLSIFNS 250
           FTPK +    ++++   FNG+ + +S++N+
Sbjct: 166 FTPKGNPSAKETYNVYEFNGSGVAMSMYNT 195


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 439 LFAEHGIKXEXILIKLASTWEGIQAAXELEXKHGIHCNL 555
           L   +G K   I++  + T + IQ    L  KH IHC+L
Sbjct: 788 LIKSNGFKGLPIVVIKSITRQLIQCLTLLNEKHVIHCDL 826


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,070,978
Number of Sequences: 5004
Number of extensions: 27543
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)