Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P07
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0355 - 3122374-3122520,3122912-3123047,3123124-3123221,312...    99   4e-21
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040...    29   3.7  

>08_01_0355 -
           3122374-3122520,3122912-3123047,3123124-3123221,
           3123724-3123801,3123876-3123945,3124452-3124516,
           3124606-3124686,3124822-3124926,3125002-3125085,
           3125175-3125250,3125358-3125436,3125526-3125646,
           3125768-3125827
          Length = 399

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
 Frame = +1

Query: 100 LDXLKXXSXVVAXXGXFEAXKXXKPTDATTNPSLILSAAGMEX--YQHXLDKAIKYGKXN 273
           LD +   S +V     F+  +   PT AT + SL+L  AG+    ++  +D A+  G+ N
Sbjct: 66  LDAVASFSEIVPDTVVFDDFEKFAPTAATVSSSLLLGIAGLPDTKFKSAIDTALADGECN 125

Query: 274 GXSI-EXXVAETLDMLSVLFGCEILKIIPGRVSVEVXAXLSFDKDASXAXAIKFIXLFAE 450
                E  ++  L       G E+  ++PGRVS E+ A L++D         + + L+++
Sbjct: 126 TMEKPEDRMSCFLTKALANVGAEMAHLVPGRVSTEIDARLAYDTQGIIQRVHELLKLYSD 185

Query: 451 HGIKXEXILIKLASTWEGIQAAXELEXKHGIHCNLTLLFSLYXAIACAEAHVTLXSPFVG 630
           H +  E +L K+ +TW+GI+A+  LE   GI  +LT ++S   A A A+A  ++   FVG
Sbjct: 186 HDVLSERLLFKIPATWQGIEASRLLE-SEGIQTHLTFVYSFAQAAAAAQAGASVVQIFVG 244

Query: 631 XILDWXVXH 657
            + DW   H
Sbjct: 245 RVRDWARTH 253


>01_07_0031 -
           40603243-40603491,40603617-40603799,40603896-40604084,
           40604244-40604916,40605583-40605737
          Length = 482

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 24/83 (28%), Positives = 42/83 (50%)
 Frame = +1

Query: 358 GRVSVEVXAXLSFDKDASXAXAIKFIXLFAEHGIKXEXILIKLASTWEGIQAAXELEXKH 537
           G VSVEV   L+ D   +   A K++    +       + IK+ +T E + +  E+   +
Sbjct: 216 GYVSVEVSPRLANDTQGT-VEAAKWLHKVVDR----PNVYIKIPATAECVPSIKEV-IAN 269

Query: 538 GIHCNLTLLFSLYXAIACAEAHV 606
           GI  N+TL+FS+    A  +A++
Sbjct: 270 GISVNVTLIFSIARYEAVIDAYI 292


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,921,744
Number of Sequences: 37544
Number of extensions: 177429
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)