Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P07
         (873 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12230.1 68414.m01415 transaldolase, putative similar to Swis...    89   4e-18
At1g51670.1 68414.m05821 expressed protein                             29   5.4  
At4g09560.1 68417.m01571 protease-associated zinc finger (C3HC4-...    28   9.4  

>At1g12230.1 68414.m01415 transaldolase, putative similar to
           Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
           [Escherichia coli O157:H7]
          Length = 405

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 53/189 (28%), Positives = 97/189 (51%), Gaps = 3/189 (1%)
 Frame = +1

Query: 100 LDXLKXXSXVVAXXGXFEAXKXXKPTDATTNPSLILSAAGMEX--YQHXLDKAIKYGKXN 273
           L+ +   S +V     F+  +   PT AT + +L+L   G+    +++ +D A+      
Sbjct: 71  LNAVSAFSEIVPDTVVFDDFERFPPTAATVSSALLLGICGLPDTIFRNAVDMALADSSCA 130

Query: 274 GX-SIEXXVAETLDMLSVLFGCEILKIIPGRVSVEVXAXLSFDKDASXAXAIKFIXLFAE 450
           G  + E  ++   +   V  G +++K++PGRVS EV A L++D +         + L+ E
Sbjct: 131 GLETTESRLSCFFNKAIVNVGGDLVKLVPGRVSTEVDARLAYDTNGIIRKVHDLLRLYNE 190

Query: 451 HGIKXEXILIKLASTWEGIQAAXELEXKHGIHCNLTLLFSLYXAIACAEAHVTLXSPFVG 630
             +  + +L K+ +TW+GI+AA  LE   GI  ++T ++S   A A ++A  ++   FVG
Sbjct: 191 IDVPHDRLLFKIPATWQGIEAARLLE-SEGIQTHMTFVYSFAQAAAASQAGASVIQIFVG 249

Query: 631 XILDWXVXH 657
            + DW   H
Sbjct: 250 RLRDWARNH 258


>At1g51670.1 68414.m05821 expressed protein
          Length = 178

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 482 NWPPLGKEFKQPKSWRXSMESI 547
           +WPPLG E K P S+  ++ S+
Sbjct: 99  DWPPLGSESKTPSSYEPALVSM 120


>At4g09560.1 68417.m01571 protease-associated zinc finger
           (C3HC4-type RING finger) family protein contains Pfam
           domain, PF02225: protease-associated (PA) domain and
           Pfam domain, PF00097: Zinc finger, C3HC4 type (RING
           finger); similar to ReMembR-H2 protein JR702
           [Arabidopsis thaliana] gi|6942149|gb|AAF32326
          Length = 431

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 337 EILKIIPGRVSVEVXAXLSFDKDASXAXAIKFIXLFA 447
           E+LK   GR   EV    SF+  A    AI FI L A
Sbjct: 123 EVLKEYAGRTDFEVWLMPSFETSAWSIMAISFISLLA 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,996,457
Number of Sequences: 28952
Number of extensions: 145113
Number of successful extensions: 234
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2048424000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)