Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P06
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   2.0  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.7  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    26   6.1  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 370 SIYHCDRSFSNISNTIHSISFLNA 299
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 803 GXGXXGFSAXMNXPPPGXGG 862
           G G  GF      PPPG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGG 206


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -1

Query: 526 FYFLKSLIMQLFEPNIKN-STQLSXQSI*ELTISKYYKGENKNP*IHVDIYDLSIYHCDR 350
           F  L++ IM+ F+  + + S     Q I +L      K ENK      D     IYHC++
Sbjct: 773 FDSLQNAIMETFDKQVTHCSVNHLVQQIRKL------KDENKKDQSGTDKLMKKIYHCEQ 826

Query: 349 SFSNISNTIHSI 314
           S    +N++ ++
Sbjct: 827 SLKEKTNSLETL 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,416
Number of Sequences: 5004
Number of extensions: 37155
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)