Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P05
         (926 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    79   7e-16
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    77   3e-15
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    76   6e-15
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    66   7e-12
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    53   7e-08

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 79.4 bits (187), Expect = 7e-16
 Identities = 52/143 (36%), Positives = 60/143 (41%)
 Frame = +2

Query: 350 GXDLGXXXXCVGVXKNGXVEXIXNXXGXXXXXXXVXXXXDGEXLIGDXXKXXXXXXXEXX 529
           G DLG    CVG   N  VE I N  G       V    D E LIGD  K          
Sbjct: 6   GIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHNT 64

Query: 530 VFDXKXXIGXEWSXXXVXXDVKXXXXKVVEKXXKXXVXVXXXXGEKVFGXEEXXXMVXXK 709
           +FD K  IG  ++   V  D+K    KV+EK  K  + V      K F  EE   MV  K
Sbjct: 65  IFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLLK 124

Query: 710 MKENXEXXXGKKVXXXVVXVXXY 778
           M+E+ E   G KV   VV V  Y
Sbjct: 125 MRESAEAFLGGKVTDAVVTVPAY 147


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 77.4 bits (182), Expect = 3e-15
 Identities = 49/145 (33%), Positives = 61/145 (42%)
 Frame = +2

Query: 344 VXGXDLGXXXXCVGVXKNGXVEXIXNXXGXXXXXXXVXXXXDGEXLIGDXXKXXXXXXXE 523
           V G DLG    CV V KNG VE I N  G       V    D E L+G+  K       E
Sbjct: 37  VIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTED-ERLVGEAAKNQAPSNPE 95

Query: 524 XXVFDXKXXIGXEWSXXXVXXDVKXXXXKVVEKXXKXXVXVXXXXGEKVFGXEEXXXMVX 703
             +FD K  IG ++    +  D+K     +V    +  V V     +K F  EE   M+ 
Sbjct: 96  NTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMIL 155

Query: 704 XKMKENXEXXXGKKVXXXVVXVXXY 778
            KMK+  E   GK V   VV V  Y
Sbjct: 156 SKMKQTAEAYLGKPVTHAVVTVPAY 180


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 76.2 bits (179), Expect = 6e-15
 Identities = 51/143 (35%), Positives = 58/143 (40%)
 Frame = +2

Query: 350 GXDLGXXXXCVGVXKNGXVEXIXNXXGXXXXXXXVXXXXDGEXLIGDXXKXXXXXXXEXX 529
           G DLG    CVG   N  VE I N  G       V    D E LIGD  K          
Sbjct: 6   GIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPHNT 64

Query: 530 VFDXKXXIGXEWSXXXVXXDVKXXXXKVVEKXXKXXVXVXXXXGEKVFGXEEXXXMVXXK 709
           +FD K  IG ++    V  D+K    KV+ K  K  + V      K F  EE   MV  K
Sbjct: 65  IFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLMK 124

Query: 710 MKENXEXXXGKKVXXXVVXVXXY 778
           M+E  E   G KV   VV V  Y
Sbjct: 125 MRETAEAYLGGKVTDAVVTVPAY 147


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 66.1 bits (154), Expect = 7e-12
 Identities = 44/143 (30%), Positives = 56/143 (39%)
 Frame = +2

Query: 350 GXDLGXXXXCVGVXKNGXVEXIXNXXGXXXXXXXVXXXXDGEXLIGDXXKXXXXXXXEXX 529
           G DLG    CV V +   VE I N  G       V    + E L+GD  K          
Sbjct: 10  GIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFT-ETERLVGDAAKNQAAMNPRNT 68

Query: 530 VFDXKXXIGXEWSXXXVXXDVKXXXXKVVEKXXKXXVXVXXXXGEKVFGXEEXXXMVXXK 709
           VFD K  IG  +       D+K    KV++      + V     +K F  +E   MV  K
Sbjct: 69  VFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLTK 128

Query: 710 MKENXEXXXGKKVXXXVVXVXXY 778
           MKE  E    K+V   V+ V  Y
Sbjct: 129 MKEISEAKLNKRVEKAVITVPAY 151


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 52.8 bits (121), Expect = 7e-08
 Identities = 39/151 (25%), Positives = 52/151 (34%)
 Frame = +2

Query: 326 DKXXXXVXGXDLGXXXXCVGVXKNGXVEXIXNXXGXXXXXXXVXXXXDGEXLIGDXXKXX 505
           +K    V G DLG    C+ + +    + I N  G       V    DGE L+G   K  
Sbjct: 46  EKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQ 105

Query: 506 XXXXXEXXVFDXKXXIGXEWSXXXVXXDVKXXXXKVVEKXXKXXVXVXXXXGEKVFGXEE 685
                E   F  K  IG  +    V  D+K    K+VE               K +   +
Sbjct: 106 AVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNG---DAWLEARGKTYSPSQ 162

Query: 686 XXXMVXXKMKENXEXXXGKKVXXXVVXVXXY 778
               +  KM+E      GK V   VV V  Y
Sbjct: 163 IGGFILSKMRETASTYLGKDVKNAVVTVPAY 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,203,226
Number of Sequences: 5004
Number of extensions: 9485
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)