Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P04
         (882 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              76   3e-14
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        29   3.8  
SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)             29   3.8  
SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)                     29   6.6  
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 35/55 (63%), Positives = 43/55 (78%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M S +ELACVYSALIL D  VA+T   I T++KAA ++V P+WPGLFAKAL+G N
Sbjct: 1   MASTSELACVYSALILHDDDVAITADKIETLVKAAKINVEPFWPGLFAKALQGHN 55



 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 299 TIDAFQGFGEQTWPIWXYIYSRRFQDGGN 213
           +I+ F+  G++ WP +  + S R + GG+
Sbjct: 106 SIEMFEAVGQENWPTYFQMLSERLKQGGS 134


>SB_10439| Best HMM Match : Metallothio_7 (HMM E-Value=3.6)
          Length = 288

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
 Frame = +2

Query: 59  CQTLKRACSLLKLRPTATCTFKTKNGVKS*ISM--CLLCSHPGGCXCCRNWXXNFHHLES 232
           C T+      + +   A C   T NG    ++M  C  C    GC CC         +  
Sbjct: 211 CVTMNGCARCVTMNGCARCV--TMNGCARCVTMNGCARCVTMNGCACCVTMNGYPRCVTM 268

Query: 233 GGCRCXAIL 259
            GC C   L
Sbjct: 269 NGCACSVTL 277


>SB_26911| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 349

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +2

Query: 65  TLKRACSLLKLRPTATCTFKTKNGVKS*ISMCLLCSHPGGCXCCRNWXXNFHHLESGG 238
           TL    +LLKL  +AT      N V +   +CL  + P    C   W   + HL SGG
Sbjct: 201 TLAHDIALLKLEKSAT----VNNNVHT---VCLPFNGPAPSDCTHCWITGWGHLASGG 251


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 752 SDDDMGFGLFD 762


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,167,290
Number of Sequences: 59808
Number of extensions: 208622
Number of successful extensions: 361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2514529411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)