Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P04
         (882 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosom...    89   6e-18
AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p pro...    89   6e-18
AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA ...    89   6e-18
Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein ( Dros...    83   5e-16

>S62170-1|AAB26902.1|  112|Drosophila melanogaster acidic ribosomal
           protein rpA2 protein.
          Length = 112

 Score = 89.4 bits (212), Expect = 6e-18
 Identities = 43/55 (78%), Positives = 48/55 (87%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +KAELACVY++LILVD  VAVTG  I+TILKAA V+V PYWPGLFAKALEGIN
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGIN 55



 Score = 37.1 bits (82), Expect = 0.032
 Identities = 22/57 (38%), Positives = 23/57 (40%)
 Frame = +1

Query: 298 VRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 468
           V+DLITNIGSGV                                  SDDDMGFGLFD
Sbjct: 56  VKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AY069125-1|AAL39270.1|  112|Drosophila melanogaster GH13422p
           protein.
          Length = 112

 Score = 89.4 bits (212), Expect = 6e-18
 Identities = 43/55 (78%), Positives = 48/55 (87%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +KAELACVY++LILVD  VAVTG  I+TILKAA V+V PYWPGLFAKALEGIN
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGIN 55



 Score = 37.1 bits (82), Expect = 0.032
 Identities = 22/57 (38%), Positives = 23/57 (40%)
 Frame = +1

Query: 298 VRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 468
           V+DLITNIGSGV                                  SDDDMGFGLFD
Sbjct: 56  VKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>AE014134-102|AAF51499.1|  112|Drosophila melanogaster CG4087-PA
           protein.
          Length = 112

 Score = 89.4 bits (212), Expect = 6e-18
 Identities = 43/55 (78%), Positives = 48/55 (87%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +KAELACVY++LILVD  VAVTG  I+TILKAA V+V PYWPGLFAKALEGIN
Sbjct: 1   MSTKAELACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGIN 55



 Score = 37.1 bits (82), Expect = 0.032
 Identities = 22/57 (38%), Positives = 23/57 (40%)
 Frame = +1

Query: 298 VRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 468
           V+DLITNIGSGV                                  SDDDMGFGLFD
Sbjct: 56  VKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>Y00504-1|CAA68557.1|  112|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for A-type ribosomal protein
           rp21C. ).
          Length = 112

 Score = 83.0 bits (196), Expect = 5e-16
 Identities = 41/55 (74%), Positives = 46/55 (83%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +KAELA VY++LILVD  VAVTG  I+TILKAA V+V PYWPGLFAKALE IN
Sbjct: 1   MSTKAELASVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEAIN 55



 Score = 37.9 bits (84), Expect = 0.018
 Identities = 24/64 (37%), Positives = 26/64 (40%)
 Frame = +1

Query: 277 KPWKASIVRDLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGF 456
           K  +A  V+DLITNIGSGV                                  SDDDMGF
Sbjct: 49  KALEAINVKDLITNIGSGVGAAPAGGAAPAAAAAAPAAESKKEEKKKEEESDQSDDDMGF 108

Query: 457 GLFD 468
           GLFD
Sbjct: 109 GLFD 112


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,295,090
Number of Sequences: 53049
Number of extensions: 352735
Number of successful extensions: 661
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4291240668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)