Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P04
         (882 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal pro...    81   1e-15
U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal prote...    77   2e-14
Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...    29   5.8  
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    29   5.8  

>AC087079-6|AAK27864.1|  111|Caenorhabditis elegans Ribosomal
           protein, acidic protein 1 protein.
          Length = 111

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M S  ELACVY+ALIL D  VA+TG  I+T+LKAA V+  PYWPGLFAKALEG++
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVD 55



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>U89307-1|AAB48625.1|  111|Caenorhabditis elegans ribosomal protein
           P1 homolog protein.
          Length = 111

 Score = 77.0 bits (181), Expect = 2e-14
 Identities = 36/55 (65%), Positives = 43/55 (78%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M S  ELACVY+ALIL D  VA+TG  I+T+LKAA V+  P WPGLFAKALEG++
Sbjct: 1   MASNQELACVYAALILQDDEVAITGEKIATLLKAANVEFEPNWPGLFAKALEGVD 55



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 101 SDDDMGFGLFD 111


>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 302 SDDDMGFGLFD 312


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 97  SDDDMGFGLFD 107


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +1

Query: 436 SDDDMGFGLFD 468
           SDDDMGFGLFD
Sbjct: 100 SDDDMGFGLFD 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,272,522
Number of Sequences: 27780
Number of extensions: 164851
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)