Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P04
         (882 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)...    58   1e-08
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)...    58   1e-08
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative     57   2e-08
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)...    57   2e-08
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)...    57   2e-08
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)       56   2e-08
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co...    35   0.063

>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +  ELAC Y+ +IL D  +A+T   I+T++KAA V++  YWP LFAK  E  N
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRN 55


>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
           similar to acidic ribosomal protein p1
          Length = 113

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +  ELAC Y+ +IL D  +A+T   I+T++KAA V++  YWP LFAK  E  N
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRN 55


>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
          Length = 111

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 27/54 (50%), Positives = 35/54 (64%)
 Frame = +3

Query: 135 VSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           +S +ELAC Y+ALIL D  + +T   IS ++K A V+V  YWP LFAK  E  N
Sbjct: 1   MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKN 54


>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +  ELAC Y+ +IL D  +A+T   I+T++KAA V +  YWP LFAK  E  N
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRN 55


>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
           similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
           from [Arabidopsis thaliana]
          Length = 112

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +  ELAC Y+ +IL D  +A+T   I+T++KAA V +  YWP LFAK  E  N
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRN 55


>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 113

 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 35/55 (63%)
 Frame = +3

Query: 132 MVSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGLFAKALEGIN 296
           M +  ELAC Y+ +IL D  +A+T   I+T++KAA V +  YWP LFAK  E  N
Sbjct: 1   MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRN 55


>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
           contains weak similarity to Swiss-Prot:52855 60S acidic
           ribosomal protein P1 (L12) [Zea mays]
          Length = 46

 Score = 35.1 bits (77), Expect = 0.063
 Identities = 19/45 (42%), Positives = 29/45 (64%)
 Frame = +3

Query: 135 VSKAELACVYSALILVDAXVAVTGXXISTILKAAAVDVXPYWPGL 269
           ++  ELAC Y+AL+L D    VT   +ST++K A +++  YWP L
Sbjct: 1   MATGELACTYAALLLHD---HVT---MSTLVKTANLNIESYWPSL 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,675,174
Number of Sequences: 28952
Number of extensions: 159046
Number of successful extensions: 328
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2077687200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)