Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P01
         (863 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    61   2e-10

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
 Frame = +1

Query: 235 LSKT-LLDRYXDLPLPEDXVLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXX 411
           LSK  +L++Y DLP     V+A Y+WIDG    +R    TL+  P +   L +WN+    
Sbjct: 10  LSKAAILNKYADLP-QNGKVMAEYIWIDGFNH-LRSKTMTLDAKPSSIDQLRVWNFDGSS 67

Query: 412 XXXXXXXXXXXHLKPQAIYRXPFRRGNXVLVXCXXY 519
                       LKP A+Y  PFRRG+ +LV    Y
Sbjct: 68  TGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACY 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,407,571
Number of Sequences: 5004
Number of extensions: 18166
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)