Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_P01
         (863 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to...    67   2e-11
At5g16570.1 68418.m01939 glutamine synthetase, putative similar ...    66   2e-11
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ...    66   3e-11
At1g66200.1 68414.m07514 glutamine synthetase, putative similar ...    64   9e-11
At1g48470.1 68414.m05418 glutamine synthetase, putative similar ...    64   1e-10
At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to...    64   2e-10

>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to
           glutamine synthetase, chloroplast precursor (glutamate--
           ammonia ligase, GS2) [Arabidopsis thaliana]
           SWISS-PROT:Q43127
          Length = 430

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/76 (40%), Positives = 39/76 (51%)
 Frame = +1

Query: 283 DXVLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 462
           D ++A Y+WI GSG  +R    T+    E P +LP WNY                L PQA
Sbjct: 75  DRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQA 134

Query: 463 IYRXPFRRGNXVLVXC 510
           I+R PFR GN +LV C
Sbjct: 135 IFRDPFRGGNNILVIC 150


>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase) [Alfalfa] SWISS-PROT:P04078
          Length = 356

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/85 (38%), Positives = 41/85 (48%)
 Frame = +1

Query: 265 DLPLPEDXVLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXX 444
           DL    D ++A Y+WI GSG  +R    TL      P  LP WNY               
Sbjct: 11  DLSDSTDQIIAEYIWIGGSGLDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGDDSEV 70

Query: 445 HLKPQAIYRXPFRRGNXVLVXCXXY 519
            + PQAI++ PFRRGN +LV C  Y
Sbjct: 71  IIYPQAIFKDPFRRGNNILVMCDAY 95


>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 31/79 (39%), Positives = 39/79 (49%)
 Frame = +1

Query: 283 DXVLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQA 462
           D ++A Y+W+ GSG  +R    TL      P  LP WNY                L PQA
Sbjct: 17  DKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQA 76

Query: 463 IYRXPFRRGNXVLVXCXXY 519
           I++ PFRRGN +LV C  Y
Sbjct: 77  IFKDPFRRGNNILVMCDAY 95


>At1g66200.1 68414.m07514 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score = 64.5 bits (150), Expect = 9e-11
 Identities = 31/85 (36%), Positives = 41/85 (48%)
 Frame = +1

Query: 265 DLPLPEDXVLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXX 444
           D+    + ++A Y+W+ GSG  +R    TL      P  LP WNY               
Sbjct: 11  DISDNSEKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGQDSEV 70

Query: 445 HLKPQAIYRXPFRRGNXVLVXCXXY 519
            L PQAI++ PFRRGN +LV C  Y
Sbjct: 71  ILYPQAIFKDPFRRGNNILVMCDAY 95


>At1g48470.1 68414.m05418 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase, GS1) [Arabidopsis thaliana]
           SWISS-PROT:Q9LVI8
          Length = 353

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 30/77 (38%), Positives = 38/77 (49%)
 Frame = +1

Query: 289 VLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIY 468
           ++A Y+WI GSG  +R    TL      P  LP WNY                L PQAI+
Sbjct: 19  IIAEYIWIGGSGMDIRSKARTLPGPVSNPTKLPKWNYDGSSTDQAAGDDSEVILYPQAIF 78

Query: 469 RXPFRRGNXVLVXCXXY 519
           + PFR+GN +LV C  Y
Sbjct: 79  KDPFRKGNNILVMCDAY 95


>At3g17820.1 68416.m02272 glutamine synthetase (GS1) identical to
           glutamine synthetase, cytosolic isozyme (glutamate--
           ammonia ligase, GS1) [Arabidopsis thaliana]
           SWISS-PROT:Q9LVI8
          Length = 354

 Score = 63.7 bits (148), Expect = 2e-10
 Identities = 30/77 (38%), Positives = 38/77 (49%)
 Frame = +1

Query: 289 VLATYVWIDGSGEXVRCXDXTLNYXPETPKDLPIWNYXXXXXXXXXXXXXXXHLKPQAIY 468
           ++A Y+WI GSG  +R    TL      P  LP WNY                L PQAI+
Sbjct: 19  IIAEYIWIGGSGMDIRSKARTLPGPVTDPSKLPKWNYDGSSTGQAAGEDSEVILYPQAIF 78

Query: 469 RXPFRRGNXVLVXCXXY 519
           + PFR+GN +LV C  Y
Sbjct: 79  KDPFRKGNNILVMCDAY 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,743,866
Number of Sequences: 28952
Number of extensions: 107592
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2019160800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)