Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_O23
(888 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0174 + 2504058-2504253,2504929-2505076,2505265-2505456,250... 36 0.033
05_04_0076 - 17697893-17697922,17698312-17698707 33 0.23
07_01_0345 + 2497910-2498114,2498311-2498458,2498551-2498742,249... 33 0.40
11_04_0368 + 16877080-16877496,16879424-16879708 32 0.53
12_02_1268 + 27458823-27460046 31 0.93
05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130 31 1.2
01_07_0086 - 40992187-40992468,40992670-40992753,40992869-409930... 30 2.1
01_07_0089 - 40999824-41000111,41000184-41000321,41000359-410008... 30 2.8
06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178 29 3.7
03_02_0019 - 5031667-5032614 29 4.9
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 29 6.5
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 29 6.5
12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621 28 8.6
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600... 28 8.6
02_01_0657 - 4888723-4890156 28 8.6
>09_01_0174 +
2504058-2504253,2504929-2505076,2505265-2505456,
2505878-2506006,2506368-2506537,2506946-2507076,
2507391-2507468
Length = 347
Score = 36.3 bits (80), Expect = 0.033
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 406 ALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG--GMVLI 579
A+ ++ L +SG S ++ ++DL P K Y +D +L +G G VLI
Sbjct: 90 AVRAVCLAVSGVNHPSDQQRMLDWIRDLFPGHVK-FYVENDAVAALASGTMGKLHGCVLI 148
Query: 580 AGTGSNALLRTSDGE 624
AGTGS A T DG+
Sbjct: 149 AGTGSIAYGVTEDGK 163
>05_04_0076 - 17697893-17697922,17698312-17698707
Length = 141
Score = 33.5 bits (73), Expect = 0.23
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +3
Query: 519 GVRHSRVPVHWSTGRRHGSYCWYRFECTITYVGWRTTQL 635
G RH V VH G HG++CWYR + G R T L
Sbjct: 10 GRRHHFVLVH---GLCHGAWCWYRVATALRRAGHRVTAL 45
>07_01_0345 +
2497910-2498114,2498311-2498458,2498551-2498742,
2498918-2499046,2499304-2499473,2499659-2499789,
2500007-2500090
Length = 352
Score = 32.7 bits (71), Expect = 0.40
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Frame = +1
Query: 226 GVEGGATHSNLVICDEAGR-------VVGRAKGLGTNHWTLGIDGCANRIISMLHEAKED 384
GV+GGA ++ + +C A V+ RA +NH ++G D + ++ +A
Sbjct: 28 GVDGGAGNT-VCVCIPAAMPFADPLPVLSRAVAGCSNHNSVGEDKARETLERVMAQALLK 86
Query: 385 AGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG 564
A + ++ L ++G ++ ++++ P K ++ +D +L +G
Sbjct: 87 ARRRRSNVC-AVCLAVAGVNHPIDQQRMLDWLREIFPSHVK-LFVENDAVAALASGTMGK 144
Query: 565 --GMVLIAGTGSNALLRTSDGEQ 627
G VLIAGTG+ A T DG +
Sbjct: 145 LHGCVLIAGTGTIAYGFTRDGRE 167
>11_04_0368 + 16877080-16877496,16879424-16879708
Length = 233
Score = 32.3 bits (70), Expect = 0.53
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 525 RHSRVPVHWSTGRRHGSYCWYRFECTITYVGWRTTQL 635
RH + VH G HG++CWYR ++ G R T L
Sbjct: 22 RHHFILVH---GVCHGAWCWYRVTTALSSAGHRVTAL 55
>12_02_1268 + 27458823-27460046
Length = 407
Score = 31.5 bits (68), Expect = 0.93
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Frame = +1
Query: 295 AKGLGTNHWTLGIDGCANRIISMLHEAKED--AGIPKDQALDSLGLTLSGCEQESSNAEL 468
A+ L T +D C R++ LHEAKE AG D S S +S +
Sbjct: 330 AENLMPRSKTKDVDACLERLVKALHEAKETKAAGGNDDDDESSSSSDDSDSSSDSEEQDK 389
Query: 469 VARVKDLDPMCAKAVY 516
+A V LD A+ Y
Sbjct: 390 LAVVTKLDFSLAQPNY 405
>05_04_0074 - 17677298-17677591,17679060-17679197,17682705-17683130
Length = 285
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +3
Query: 525 RHSRVPVHWSTGRRHGSYCWYRFECTITYVGWRTTQLRWLGSFTRATKVE 674
+H V VH G HG++CWY+ + G R T L S +V+
Sbjct: 18 QHHFVLVH---GLCHGAWCWYKAAAALRRAGHRATALDMAASGAHPARVD 64
>01_07_0086 -
40992187-40992468,40992670-40992753,40992869-40993054,
40993076-40993243
Length = 239
Score = 30.3 bits (65), Expect = 2.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 537 VPVHWSTGRRHGSYCWYRFECTITYVGWRTTQLRWLGSFTRATKVE 674
+PVH G HG++CWY+ + G R T L S +++
Sbjct: 13 IPVH---GLCHGAWCWYKVVTMLRSEGHRVTALDLAASGVHPARID 55
>01_07_0089 -
40999824-41000111,41000184-41000321,41000359-41000840,
41001532-41001601
Length = 325
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTTQL 635
G HG++CWYR + G R T L
Sbjct: 50 GLGHGAWCWYRVVAALRAAGHRATAL 75
>06_03_1174 - 28164003-28164350,28164504-28164680,28165147-28166178
Length = 518
Score = 29.5 bits (63), Expect = 3.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 621 RTTQLRWLGSFTRATKVEL 677
RTTQL+WLG F R +++L
Sbjct: 354 RTTQLKWLGGFRRLKELQL 372
>03_02_0019 - 5031667-5032614
Length = 315
Score = 29.1 bits (62), Expect = 4.9
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 391 IPKDQALDSLGLTLSGCEQ--ESSNAELVARVKDLDPMCAKAVY 516
+P+DQ D L L+ + ++ A+LVA +D DP CAK V+
Sbjct: 104 LPQDQLRDLLAGALAAHPEAGRAARADLVA-ARDRDPACAKMVH 146
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = -1
Query: 387 CVFFGLVQHAYDPIGASVYSKSPMVRAETFSSPNDTSSFVAYHKVRVSCSSLYSTEKHC 211
C + ++++++ + +++ P+ F S ND S H + V C L E+HC
Sbjct: 172 CCYSIVLKNSHACVEGAMHHDCPICFEYLFESTNDVSVLPCGHTIHVKC--LREMEEHC 228
>01_06_0192 + 27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 28.7 bits (61), Expect = 6.5
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +1
Query: 283 VVGRAKGLGTNHWTLGID-GCANRIISMLHEAKEDAGIPKDQALDSLGLTLS 435
+VG + G H D GC R + E+ EDAG KD++ G LS
Sbjct: 1696 IVGSEENSGEGHCVCSSDNGCVPRECTCHLESNEDAGTIKDESYYLSGQPLS 1747
>12_02_0596 + 20888675-20888715,20889940-20890187,20890218-20890621
Length = 230
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 340 CANRIISMLHEAKEDAGIPKDQALDSLGLTLS 435
C+N I+ L E K+D G P +L LG ++S
Sbjct: 75 CSNVILDKLPEKKKDPGCPTITSLCDLGASIS 106
>10_08_0558 +
18756797-18756887,18757189-18757262,18759881-18760069,
18760190-18760309,18760457-18760521,18760684-18760828,
18761304-18763337,18763904-18764025,18764127-18764309,
18764635-18764690,18765086-18765141
Length = 1044
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 358 SMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNAELVARVKDLDPM 498
S + E K++ G K+ D L L L + + SN+EL+ VKDLD M
Sbjct: 421 SQIEELKQELGHEKNLNGD-LHLQLQ--KMQESNSELLLAVKDLDEM 464
>02_01_0657 - 4888723-4890156
Length = 477
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -3
Query: 754 VRWIWRDTETIDVIYHRXHGFMRYPVSSTFVARVNDPSHRSCVVLHPTYVIVHSNRY 584
V W+ + + YHR HG + +P AR+ P + V ++ SN Y
Sbjct: 153 VLWV-QSCAVFSLYYHRVHGLVEFPPEDDLDARLTLPGLPAMSVADVPSFLLPSNPY 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,807,952
Number of Sequences: 37544
Number of extensions: 467283
Number of successful extensions: 1402
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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