Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O23
         (888 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   4.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.5  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 300 FSSPNDTSSFVAYHKVRVSCSSL-YSTEKHC 211
           +S    T +  +YH++ + CS + +S  K+C
Sbjct: 65  YSGSKCTWTITSYHRINLKCSLVEFSENKNC 95


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 310 TNHWTLGIDGCANRIISMLHEAKEDAGIPKDQ 405
           + H TLG+   A R I  L E +    + K+Q
Sbjct: 82  SRHTTLGLLTKAKRFIKSLEERERKHAVHKEQ 113


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -3

Query: 667 FVARVNDPSHRSCVVLHPTYVIV 599
           F A V  P HR CV +     IV
Sbjct: 166 FTAHVTHPRHRLCVFVAGVVFIV 188


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 771 SLXHTLCVGYGEIRRPSTSSITD 703
           ++ H LC+GYG   R    S+TD
Sbjct: 333 AMSHMLCIGYG---RFPPQSLTD 352


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 771 SLXHTLCVGYGEIRRPSTSSITD 703
           ++ H LC+GYG   R    S+TD
Sbjct: 301 AMSHMLCIGYG---RFPPQSLTD 320


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 374 ASCSMLMILLAHPSIPRVQ 318
           A   ++M+L+ HP  PR++
Sbjct: 150 AIVGIVMVLIIHPGDPRIK 168


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,949
Number of Sequences: 438
Number of extensions: 4701
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)