Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_O23
(888 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30540.1 68414.m03736 ATPase, BadF/BadG/BcrA/BcrD-type family... 40 0.002
At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic... 31 1.0
At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic... 31 1.0
At3g10870.1 68416.m01309 hydrolase, alpha/beta fold family prote... 30 1.8
At4g37140.1 68417.m05259 esterase, putative similar to ethylene-... 30 2.4
At4g16690.1 68417.m02520 esterase/lipase/thioesterase family pro... 30 2.4
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi... 30 2.4
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 29 4.1
At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast... 29 4.1
At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containi... 29 4.1
At2g23620.1 68415.m02818 esterase, putative similar to ethylene-... 29 5.4
At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family prote... 29 5.4
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 28 7.2
At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family prote... 28 7.2
At5g23060.1 68418.m02696 expressed protein 28 9.5
>At1g30540.1 68414.m03736 ATPase, BadF/BadG/BcrA/BcrD-type family
contains Pfam PF01869: BadF/BadG/BcrA/BcrD ATPase
family; similar to Transcriptional regulators of
NagC/XylR (ROK) family, sugar kinase (GI:15023013)
[Clostridium acetobutylicum]; similar to
N-acetylglucosamine kinase (EC 2.7.1.59) (GlcNAc kinase)
(Swiss-Prot:Q9UJ70) [Homo sapiens]
Length = 351
Score = 39.9 bits (89), Expect = 0.002
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Frame = +1
Query: 283 VVGRAKGLGTNHWTLGIDGCANRIISMLHEAKEDAGIPKDQALDSLGLTLSGCEQESSNA 462
++GRA TN ++G + + ++ EA +G K + + L +SG S
Sbjct: 62 ILGRAVAGCTNRNSVGETAARDSLEQVISEALVQSGFDKSD-VRGVCLGVSGVNHPSDQE 120
Query: 463 ELVARVKDLDPMCAKAVYAASDTAGSLFTGAPDG--GMVLIAGTGSNALLRTSDGEQ 627
++ ++D+ P K VY +D +L +G G VLIAGTG A DG++
Sbjct: 121 KIENWIRDMFPSHVK-VYVQNDAIVALASGTMGKLHGCVLIAGTGCIAYGFDEDGKE 176
>At1g62800.2 68414.m07090 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 405
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 313 NHWTLGIDGCANRIISM---LHEAKEDAGIPKD--QALDSLGL-TLSGCEQE 450
N WT+ + G A+RIISM L+ A E G P D + +G+ T +G +E
Sbjct: 310 NDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEE 361
>At1g62800.1 68414.m07089 aspartate aminotransferase, cytoplasmic
isozyme 2 / transaminase A (ASP4) identical to aspartate
aminotransferase, cytoplasmic isozyme 2 SP:P46646
[Arabidopsis thaliana]
Length = 403
Score = 31.1 bits (67), Expect = 1.0
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Frame = +1
Query: 313 NHWTLGIDGCANRIISM---LHEAKEDAGIPKD--QALDSLGL-TLSGCEQE 450
N WT+ + G A+RIISM L+ A E G P D + +G+ T +G +E
Sbjct: 308 NDWTIELKGMADRIISMRQQLYAALEARGTPGDWSHIIKHIGMFTFTGLSEE 359
>At3g10870.1 68416.m01309 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, SP|Q43360 PIR7B protein {Oryza sativa};
contains Pfam profile PF00561: hydrolase, alpha/beta
fold family
Length = 276
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 522 VRHSRVPVHWST--GRRHGSYCWYRFECTITYVGWRTT 629
++ SR P H+ G GS+CWY+ +C + G+ T
Sbjct: 12 LKPSRKPPHFVLIHGMSLGSWCWYKIKCLMEVSGFTVT 49
>At4g37140.1 68417.m05259 esterase, putative similar to
ethylene-induced esterase [Citrus sinensis] GI:14279437,
polyneuridine aldehyde esterase [Rauvolfia serpentina]
GI:6651393; contains Interpro entry IPR000379
esterase/lipase/thioesterase family
Length = 153
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTTQLRWLGSFTRATKVE 674
G HG++CWY+ + + G R T + S +KVE
Sbjct: 9 GGCHGAWCWYKVKPVLEASGHRVTVVDLTASGVNMSKVE 47
>At4g16690.1 68417.m02520 esterase/lipase/thioesterase family
protein similar to ethylene-induced esterase [Citrus
sinensis] GI:14279437, polyneuridine aldehyde esterase
[Rauvolfia serpentina] GI:6651393, SP|Q40708 PIR7A
protein {Oryza sativa}; contains Interpro entry
IPR000379
Length = 262
Score = 29.9 bits (64), Expect = 2.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTTQLRWLGS 650
G HG++CWY+ + G+++T + G+
Sbjct: 18 GASHGAWCWYKLTTLLDAAGFKSTSVDLTGA 48
>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 455
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 322 TLGIDGCANRIISMLHEAKEDAGIPKDQALDSLGLTLSGC 441
+LG+ GC +S+ E +E+A + D A+ +G+ LS C
Sbjct: 326 SLGVHGCGEEALSLFEEMEEEASVEPD-AITFVGV-LSAC 363
>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
family protein similar to SP|Q99816 Tumor susceptibility
gene 101 protein {Homo sapiens}; contains Pfam profile
PF05743: Tumour susceptibility gene 101 protein (TSG101)
Length = 368
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 793 SASKCSLITXPYVVRWIWRDTETIDVIYHRXHGFMRYP 680
+ S L++ PY+ WI+ + +D+ H F R P
Sbjct: 119 NVSPSGLVSLPYLQNWIYPSSNLVDLASHLSAAFSRDP 156
>At5g11520.1 68418.m01344 aspartate aminotransferase, chloroplast /
transaminase A (ASP3) (YLS4) identical to SP|P46644
Aspartate aminotransferase, chloroplast precursor (EC
2.6.1.1) (Transaminase A) {Arabidopsis thaliana};
identical to cDNA YLS4 mRNA for aspartate
aminotransferase (ASP3), partial cds GI:13122285
Length = 449
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 283 VVGRAKGLGTNHWTLGIDGCANRIISM---LHEAKEDAGIPKD 402
V+ R K L N WTL + A+RIISM L EA G P D
Sbjct: 345 VILRDKNL-FNEWTLELKAMADRIISMRKQLFEALRTRGTPGD 386
>At2g17210.1 68415.m01987 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 715
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 421 GLTLSGCEQESSN----AELVARVKDLDPMCAKAVYAASDT 531
G LSGC +E+VA V +L+P+C+ AS T
Sbjct: 601 GAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASST 641
>At2g23620.1 68415.m02818 esterase, putative similar to
ethylene-induced esterase [Citrus sinensis] GI:14279437,
polyneuridine aldehyde esterase [Rauvolfia serpentina]
GI:6651393; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 263
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTT 629
G HG++CWY+ + + VG R T
Sbjct: 15 GSCHGAWCWYKVKPLLEAVGHRVT 38
>At2g23600.1 68415.m02816 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 263
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTTQL 635
G HG++CWY+ + + +G R T L
Sbjct: 15 GACHGAWCWYKVKPLLEALGHRVTAL 40
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = -1
Query: 354 DPIGASVYSKSPMVRAETFSSPNDTSSFVAYHKVRVSCSSLYSTEKHC 211
+PI +S SKSP+ ++E+ SSP D + H V S +Y K+C
Sbjct: 294 NPIPSSPISKSPVSKSESSSSPKDENE----HSV----SLVYKGHKNC 333
>At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family protein
similar to ethylene-induced esterase [Citrus sinensis]
GI:14279437, polyneuridine aldehyde esterase [Rauvolfia
serpentina] GI:6651393; contains Pfam profile PF00561:
hydrolase, alpha/beta fold family
Length = 263
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 558 GRRHGSYCWYRFECTITYVGWRTTQLRWLGSFTRATKVE 674
G HG++CWY+ + + VG T + S T++E
Sbjct: 14 GLCHGAWCWYKVKTHLEAVGHCVTAVDLAASGINMTRLE 52
>At5g23060.1 68418.m02696 expressed protein
Length = 387
Score = 27.9 bits (59), Expect = 9.5
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Frame = +1
Query: 367 HEAKEDAGIPKDQALDSLGLTLSGCEQ-ESSNAELVARVKDLDPMCAKAVYAASDTAGSL 543
HEAK IPKDQ + SL Q + + + + + + + A+ A DTA +
Sbjct: 53 HEAKAAVSIPKDQIVSSLTEVEKTINQVQETGSSVFDATQRVFQVVGDALKPALDTALPI 112
Query: 544 FTGAPDGGMVLIAGTGSNALLRTSDGEQ 627
A + M L + S A + + Q
Sbjct: 113 AKQAGEEAMKLASPAFSEASKKAQEAMQ 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,707
Number of Sequences: 28952
Number of extensions: 348063
Number of successful extensions: 922
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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