Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O22
         (887 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos...   134   1e-32
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S...   129   5e-31
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    28   2.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   2.7  
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po...    27   4.7  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   6.2  

>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 187

 Score =  134 bits (325), Expect = 1e-32
 Identities = 76/173 (43%), Positives = 104/173 (60%), Gaps = 4/173 (2%)
 Frame = +3

Query: 81  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 260
           DI   H RK +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 261 SRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 434
           S++A     K  + EG   V+VGTVT+D RL  +PK++VAAL  T+ ARARIL AGGE+L
Sbjct: 64  SKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVL 123

Query: 435 TFDQLALRAPTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
           T DQLALRAPTG  TVL  G + A+   R           P  H   YVR++G
Sbjct: 124 TLDQLALRAPTGSNTVLLRGKKHAREAYRH------FGFGPHKHKAPYVRSEG 170


>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
           L18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  129 bits (312), Expect = 5e-31
 Identities = 72/173 (41%), Positives = 103/173 (59%), Gaps = 4/173 (2%)
 Frame = +3

Query: 81  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 260
           DI   H +K +R++  S+++               T+++FN+ +L+RLF S+ NRPPIS+
Sbjct: 4   DIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISI 63

Query: 261 SRLAR--HMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 434
           S++A     K  + +    VVVGTVT+D R+  +PK+++AAL  T+ ARARIL AGGE+L
Sbjct: 64  SKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVL 123

Query: 435 TFDQLALRAPTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
           T DQLALRAPTG  TVL  G + A+   R           P  H   YVR++G
Sbjct: 124 TLDQLALRAPTGSNTVLVRGKKHAREAYRH------FGFGPHKHKAPYVRSEG 170


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +3

Query: 336 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 449
           D+  Y+IP + +  +  TE+A+ R     G+IL  D +
Sbjct: 59  DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 437 SKNFSSSSQNACTSFFGNMKSSHRH 363
           SKN  SS  N+ TSFF ++ + +RH
Sbjct: 2   SKNSFSSMANSVTSFFQSLTTPNRH 26


>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 434 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDXP 321
           KN+ SS  +  TS + N+ +S+R +R  +QS V  + P
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFP 207


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +2

Query: 473 EDSTGYKVSENAREAVRHFGP--GSRSTXLSH*XLCSHQGDMKKPGPVV 613
           E++ G K +E  R+ +R      G+RS  LS   +C+    M KP  +V
Sbjct: 366 EETYGLKTTEEERQFIRRACELIGTRSARLSACGVCALVRKMNKPSMIV 414


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 303 LIAVVVGTVTNDVRLYKI-PKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT 479
           L+ +VV  +TNDVRL++I  +  +   H  E   A  L A   +++   +     T  KT
Sbjct: 694 LLKMVVPLITNDVRLWRIVARYYLWRRHFAESLNA-TLKAYRILISSPNVTSDEATWNKT 752

Query: 480 VLGTRSAKMLVRQCVTLXLAPG 545
           V G   A  LV     L   PG
Sbjct: 753 VEG---ALELVEAYANLGEMPG 771


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,028
Number of Sequences: 5004
Number of extensions: 55991
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)