Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O22
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   155   4e-38
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   152   4e-37
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   137   1e-32
11_02_0045 - 7705728-7707581                                           33   0.40 
01_06_0579 + 30379243-30379617                                         29   3.7  
06_01_1101 - 9044679-9045320,9045484-9045890,9046020-9046274,904...    29   4.9  
09_06_0121 + 20975132-20975755,20976834-20976977,20977333-209774...    29   6.5  
02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797     29   6.5  

>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  155 bits (376), Expect = 4e-38
 Identities = 84/165 (50%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
 Frame = +3

Query: 99  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 278
           ++K +RT  +S D+               T + FN ++L+RLFMS+ NRPP+S+ RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 279 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 458
           M+    E  IAV+VGTVT+D R+ +IPKM V AL  TE ARARI+ AGGE LTFDQLALR
Sbjct: 71  MEGK-EENNIAVIVGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 459 APTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
           AP G+ TVL  G ++A+  VR       APG P SHTK YVR+KG
Sbjct: 130 APLGENTVLLRGPKNAREAVRH---FGKAPGVPHSHTKPYVRSKG 171


>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  152 bits (368), Expect = 4e-37
 Identities = 84/171 (49%), Positives = 111/171 (64%), Gaps = 8/171 (4%)
 Frame = +3

Query: 99  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 278
           ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 279 M--KKPTREGL----IAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 440
           M  K P R  +    IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 441 DQLALRAPTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
           DQLALRAP G+ TVL  G ++A+  V+       APG P S+TK YVR+KG
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKH---FGPAPGVPHSNTKPYVRSKG 178


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  137 bits (331), Expect = 1e-32
 Identities = 82/179 (45%), Positives = 107/179 (59%), Gaps = 16/179 (8%)
 Frame = +3

Query: 99  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 278
           ++K +RT  KS D+               T + FN ++LRRLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 279 MKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 458
           M+   +E  IAV+VGTVT+D R+Y++P M VAAL  TE ARARI+  GGE LTFDQLALR
Sbjct: 71  MEG--KENQIAVIVGTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALR 128

Query: 459 APTGKKT------VLGTRSAKML---------VRQCVT-LXLAPGAPXSHTKXYVRTKG 587
           AP G+ T      +L   +  +L          R+ V     APG P S+TK YVR+KG
Sbjct: 129 APLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 187


>11_02_0045 - 7705728-7707581
          Length = 617

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
 Frame = -1

Query: 599 AFSCPLGANIGFSVRARCSWSQXQSDALPHEHFR*PCTQYCLLASRSTKSQLIKSKNFSS 420
           AF C   A  GF VR+  S++    DA+    F   CT+  L + + T     K +   +
Sbjct: 37  AFYCTYAARAGFRVRSSKSFASRIDDAIIMRRF--VCTRQGLPSRKDTLLDASKKRRNRA 94

Query: 419 SSQNACTSFFG-NMKSSHRHL 360
           S++ AC +    N + S R L
Sbjct: 95  SARAACPAMLQVNRRPSSRWL 115


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -3

Query: 351 CTVSRHL*XSPLPRQSNPHELASS 280
           CT+S H   SP+ R S+PH LASS
Sbjct: 11  CTISCH---SPMRRSSSPHRLASS 31


>06_01_1101 -
           9044679-9045320,9045484-9045890,9046020-9046274,
           9046375-9046498,9047237-9047289,9047388-9047648,
           9047795-9047848,9047975-9048458,9048554-9048592
          Length = 772

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 322 PTTTAIKPSRVGFFMWR-AKRDTEIGGRLIRLIKSR 218
           P TTA KP RV F + +  K D E+ G L  L+++R
Sbjct: 676 PNTTAPKPKRVRFALPKDTKIDREVRGELQELMEAR 711


>09_06_0121 +
           20975132-20975755,20976834-20976977,20977333-20977457,
           20978090-20978194,20978755-20978989
          Length = 410

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +3

Query: 189 NAKFNQIVLRRLFMSR-INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKM 365
           N K N  VL  L +S+ +  P ++V  L  H + P       +V+GT T+D     +  +
Sbjct: 21  NWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHL-LL 79

Query: 366 TVAALHVTEKARARILAAGGEI 431
             AAL +  +  A   AAGG +
Sbjct: 80  ADAALPLPPRLAAAAAAAGGAV 101


>02_04_0324 + 22032748-22032895,22035274-22035593,22035709-22036797
          Length = 518

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +3

Query: 315 VVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLGTR 494
           ++G++  DV    I  + VAA+ V  + R  +   GG +L   Q+A+    G +  LGT 
Sbjct: 329 ILGSIITDV--VSISSVAVAAVVVDRRGRRTLFMVGGAVLILCQVAMAWIFGAE--LGTD 384

Query: 495 SAKMLVR 515
             + + R
Sbjct: 385 GGRAMPR 391


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,799,304
Number of Sequences: 37544
Number of extensions: 402582
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)