Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O22
         (887 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              149   3e-36
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38412| Best HMM Match : DUF733 (HMM E-Value=8.1)                    29   5.0  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   5.0  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  149 bits (361), Expect = 3e-36
 Identities = 82/171 (47%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
 Frame = +3

Query: 57  FWLSRWVFDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSR 236
           +W      DI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR
Sbjct: 103 YWTLFHGIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSR 162

Query: 237 INRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILA 416
             RPP+S++RL R MK    +  I VVVG++T+D R++++P + + AL  +E ARARIL 
Sbjct: 163 TKRPPLSLARLVRKMKASGHKDKICVVVGSITDDKRIFEVPALKICALRFSETARARILK 222

Query: 417 AGGEILTFDQLALRAPTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHT 563
           AGGEILTFDQLALRAP G+ TVL  G R A+   R    + LAPG P S T
Sbjct: 223 AGGEILTFDQLALRAPLGQNTVLLQGPRKAREAERH---MGLAPGVPHSDT 270


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 464 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 354
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_38412| Best HMM Match : DUF733 (HMM E-Value=8.1)
          Length = 280

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 511 TSIFADLVPSTVFLPVGARRAS*SKVRISP 422
           T  FA LVPST  L  G  R S  K+R+SP
Sbjct: 26  TGPFAPLVPSTFNLRSGISRRSLIKLRVSP 55


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 388 VT*RAATVIFGILYSLTSFVTVPTTTAIKPSR 293
           +T R  T++FGIL  L +     TT  IKP R
Sbjct: 616 ITLRPITILFGILALLLNLFVFVTTVGIKPLR 647


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 367 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWV 489
           RWL ++  + L H  WL   ++L  +SWL+ +R      W+
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRWL 57


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,330,007
Number of Sequences: 59808
Number of extensions: 448306
Number of successful extensions: 1062
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)