Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O22
         (887 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   168   5e-42
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    29   5.9  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    29   5.9  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  168 bits (408), Expect = 5e-42
 Identities = 91/171 (53%), Positives = 112/171 (65%), Gaps = 2/171 (1%)
 Frame = +3

Query: 81  DINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISV 260
           DINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P+S+
Sbjct: 4   DINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPLSL 63

Query: 261 SRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 440
           ++LAR ++K   E    V + TVT+D RLY +PK++VAALHVTE ARARILAAGGEI+T 
Sbjct: 64  AKLARAVQKAGNENKTVVTLSTVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITL 123

Query: 441 DQLALRAPTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
           DQLAL++P G+ TV   G RSA+   +       APG P SHTK YVR+KG
Sbjct: 124 DQLALKSPKGENTVFLQGPRSAREAEKH---FGPAPGVPHSHTKPYVRSKG 171


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 197 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDXHK*RETVQDTED 364
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ D  + R     T+D
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 172


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +2

Query: 197 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDXHK*RETVQDTED 364
           + +D S+P+ ++P   +TN   S+  P  E++  G D   G+ D  + R     T+D
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAYYDHTKD 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,514,854
Number of Sequences: 27780
Number of extensions: 338106
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)