Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP04_F_O22
(887 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 150 1e-36
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 143 1e-34
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 117 1e-26
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 1.0
At2g04330.1 68415.m00429 hypothetical protein contains Pfam prof... 29 3.1
At5g35794.1 68418.m04297 hypothetical protein contains Pfam prof... 29 4.1
At4g03890.1 68417.m00546 hypothetical protein contains Pfam prof... 29 4.1
At2g23480.1 68415.m02803 hypothetical protein contains Pfam prof... 29 4.1
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 7.2
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 9.5
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 150 bits (363), Expect = 1e-36
Identities = 80/164 (48%), Positives = 108/164 (65%), Gaps = 2/164 (1%)
Frame = +3
Query: 102 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 281
+K +RT KS D+ TN+KFN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 282 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 461
+E IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 TG--KEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 462 PTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
P G+ TVL G ++++ V+ APG P SH+K YVR KG
Sbjct: 130 PLGQNTVLLRGPKNSREAVKH---FGPAPGVPHSHSKPYVRAKG 170
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 143 bits (347), Expect = 1e-34
Identities = 77/164 (46%), Positives = 107/164 (65%), Gaps = 2/164 (1%)
Frame = +3
Query: 102 RKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARHM 281
+K +RT KS D+ +N+ FN ++L+RLFMS++N+ P+S+SRL M
Sbjct: 12 KKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFM 71
Query: 282 KKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRA 461
++ IAV+VGT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRA
Sbjct: 72 TG--KDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRA 129
Query: 462 PTGKKTVL--GTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
P G+ TVL G ++++ V+ APG P S+TK YVR KG
Sbjct: 130 PLGQNTVLLRGPKNSREAVKH---FGPAPGVPHSNTKPYVRHKG 170
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 117 bits (281), Expect = 1e-26
Identities = 62/120 (51%), Positives = 77/120 (64%)
Frame = +3
Query: 228 MSRINRPPISVSRLARHMKKPTREGLIAVVVGTVTNDVRLYKIPKMTVAALHVTEKARAR 407
MS++N+ P+S+SRL R+M ++G IAV+VGTVT+DVR+ +P +TV AL TE ARAR
Sbjct: 1 MSKVNKAPLSLSRLVRYMDG--KDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARAR 58
Query: 408 ILAAGGEILTFDQLALRAPTGKKTVLGTRSAKMLVRQCVTLXLAPGAPXSHTKXYVRTKG 587
I AGGE LTFDQLAL PT + + R K APG P SHTK YVR G
Sbjct: 59 IHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTG 118
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 374 CSSCYRKSSCTHFGCWRRNSYF 439
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At2g04330.1 68415.m00429 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 564
Score = 29.5 bits (63), Expect = 3.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 355 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRDTEIGGRLIRLIKSR 218
+LY LTS + VPT T + S + F RA D I ++ R
Sbjct: 347 VLYFLTSSIVVPTKTGERASPIDDFCVRAASDLTFSFEAIPSLRER 392
>At5g35794.1 68418.m04297 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 662
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 355 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 260
+LY LTS + VPT T + S + F RA D
Sbjct: 377 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 408
>At4g03890.1 68417.m00546 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 301
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -2
Query: 358 GILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 260
G+LY LTS + V T T K S V F RA D
Sbjct: 101 GVLYFLTSIIVVLTKTGEKGSPVDNFCLRAASD 133
>At2g23480.1 68415.m02803 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 705
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 355 ILYSLTSFVTVPTTTAIKPSRVGFFMWRAKRD 260
+LY LTS + VPT T + S + F RA D
Sbjct: 440 VLYFLTSIIAVPTKTGERASPIDDFCVRAASD 471
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 338 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 463
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 201 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 308
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,555,173
Number of Sequences: 28952
Number of extensions: 312135
Number of successful extensions: 827
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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