Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O21
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)          29   6.6  
SB_39512| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)                 29   6.6  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_40784| Best HMM Match : TGF_beta (HMM E-Value=6.40393e-43)
          Length = 1402

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 265  HQVKGRTGLQQGLEGRLRVRAATAQRLR--QESPGSARRRERQGQGRLWNSRGRTSSAR 435
            HQ K  + ++ G +GR + +A++A      Q S GS R R + G      S  R+S++R
Sbjct: 872  HQAKSASSVEYGQDGRRQEKASSASSSASGQRSSGS-RYRGKAGSASSGTSGQRSSTSR 929


>SB_39512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +1

Query: 328 ATAQRLRQESPGSARRRERQGQGRLWNSRGRTSSAR 435
           ATA+++R E    A RRERQ   + W  R R S  R
Sbjct: 3   ATAEKIRLEEKQRAARRERQKSDQEWAPR-RNSDRR 37


>SB_21673| Best HMM Match : Troponin (HMM E-Value=0.34)
          Length = 337

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
 Frame = +2

Query: 227 EFHKTLEQQFNSLTKSKDAQDFSKAW---------KDGSESVLQQLNAFAKSLQGALGDA 379
           ++ + ++   + + + KDA ++   W         +D SES   ++N F    +G+  D 
Sbjct: 149 KYQRQIKDNESEIQRLKDAIEYRDNWLAERGLNLYEDNSESNKDEINVFESLREGSTIDE 208

Query: 380 NGKAKGGFGTVEAEHRAHGRXSS 448
           +G  K  F   E+  R+  + SS
Sbjct: 209 SGSEKSSFS--ESRSRSDSQRSS 229


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 17/59 (28%), Positives = 25/59 (42%)
 Frame = +1

Query: 259 LAHQVKGRTGLQQGLEGRLRVRAATAQRLRQESPGSARRRERQGQGRLWNSRGRTSSAR 435
           + H  +G+   +Q  EG ++ R  + + L   S    R      QGR WN    TS  R
Sbjct: 539 MTHGQEGQLPSEQTTEGLVQERFPSLRTLSVGSAEERRTTVYMAQGRSWNLTHETSEER 597


>SB_1031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1933

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 350  KSLQGALGDANGKAKGGFGTVEAEHRAHGRXSSXRATLDV 469
            K + GA+    G  +GG  T+ A   + GR +   AT DV
Sbjct: 1191 KGIAGAMQGGEGAVEGGSHTIGAAGNSPGRSTDSAATSDV 1230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,823,912
Number of Sequences: 59808
Number of extensions: 275413
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)