Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O21
         (885 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49470.2 68418.m06121 protein kinase family protein contains ...    29   4.1  
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr...    29   5.4  
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr...    29   5.4  
At1g70520.1 68414.m08116 protein kinase family protein contains ...    29   5.4  
At2g43745.1 68415.m05438 expressed protein weak similarity to RT...    28   7.2  
At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit (...    28   9.5  
At1g67890.1 68414.m07752 protein kinase family protein contains ...    28   9.5  
At1g26650.1 68414.m03245 expressed protein                             28   9.5  

>At5g49470.2 68418.m06121 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 834

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +1

Query: 310 RLRVRAATAQRLRQESPGSARRRERQGQGRLWNSRGRTSSARAXELRK 453
           RL+V A   QR    SP    RR       +W   G  S   A  LRK
Sbjct: 31  RLKVSAEMKQRSHSASPQRPVRRNSNDGTPMWRKTGAASFRHASPLRK 78


>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 278 DAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKGGFGTVEAEHRAHGRXSSXRA 457
           D  D  K   DG +  L QLNA  ++L+  + D   + KG    V  + +         A
Sbjct: 30  DGGDEPKLRSDGGDIELDQLNAKIRALESQIDDKTKELKGREELVTEKEKLLQERQDKVA 89

Query: 458 TLDVE 472
           +L+ E
Sbjct: 90  SLETE 94


>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
           transmembrane domains; similar to DNA double-strand
           break repair rad50 ATPase. (Swiss-Prot:O33600)
           [Sulfolobus acidocaldarius]
          Length = 440

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +2

Query: 278 DAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKGGFGTVEAEHRAHGRXSSXRA 457
           D  D  K   DG +  L QLNA  ++L+  + D   + KG    V  + +         A
Sbjct: 30  DGGDEPKLRSDGGDIELDQLNAKIRALESQIDDKTKELKGREELVTEKEKLLQERQDKVA 89

Query: 458 TLDVE 472
           +L+ E
Sbjct: 90  SLETE 94


>At1g70520.1 68414.m08116 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 649

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 272 SKDAQDFSKAWKDGSESVLQQLNAFAKSLQGALGDANGKAKGGFGTV 412
           SKD +  +K  KD S   L    +  +   G+  +AN   +GGFGTV
Sbjct: 296 SKDVEKMAKTLKDSS---LNFKYSTLEKATGSFDNANKLGQGGFGTV 339


>At2g43745.1 68415.m05438 expressed protein weak similarity to RTM1
           (GI:6503088) [Arabidopsis thaliana]
          Length = 158

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 44  FDTLLWCLQSRFAXPSALSLSTVHHGRQVRSSLRLHRSGPR 166
           FD ++  +Q  F    AL LS  H G +  S+ R+H  G R
Sbjct: 46  FDEVIMSIQFGFLENGALVLSKQHGGIEEGSNFRVHGGGIR 86


>At4g18780.1 68417.m02774 cellulose synthase, catalytic subunit
           (IRX1) nearly identical to gi:12836997
          Length = 985

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = -3

Query: 310 VLPSLAEVLCVL*LGERVKLLF*SLMELPWCGV 212
           ++P+L+ +  +L LG  + ++  S++EL W GV
Sbjct: 787 IIPTLSNLASMLFLGLFISIILTSVLELRWSGV 819


>At1g67890.1 68414.m07752 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 765

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 310 RLRVRAATAQRLRQESPGSARRRERQGQGR-LWNSRGRTSSARAXELRK 453
           +L+V A   +R    SP    RR   G+G  LW   G  S   A  LRK
Sbjct: 31  KLKVSAEIKRRSHSSSPKRPSRRN-SGEGTPLWRKTGAASFRHASPLRK 78


>At1g26650.1 68414.m03245 expressed protein
          Length = 335

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 373 SERSLETLGEGVELLQHGLGAVLPSLAEVLC 281
           S  +LE L E V +L++ LGA++ + A ++C
Sbjct: 24  SSNALEILRETVRILRYNLGALMLTTAVLIC 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,115,415
Number of Sequences: 28952
Number of extensions: 180030
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)