Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O20
         (863 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0234 + 15187065-15188241,15188316-15188494                       43   3e-04
04_03_0649 - 18402976-18403220,18403305-18404499                       35   0.096
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818...    30   2.1  
01_07_0025 + 40565296-40565497,40565591-40566075                       29   6.3  

>11_04_0234 + 15187065-15188241,15188316-15188494
          Length = 451

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 5/97 (5%)
 Frame = +3

Query: 366 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 533
           +S+K+   G  V  +LS+G D   E+     ++ +   +  R AFINS + LA   GFDG
Sbjct: 98  SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157

Query: 534 IDLALAVPKS*A*EDPLDLGIALA-WN*EXIRHHASR 641
           +DLA   P +    D  +LG  LA W  E +    +R
Sbjct: 158 LDLAWRFPATQL--DMENLGDLLAEWRAEIMEDSTTR 192


>04_03_0649 - 18402976-18403220,18403305-18404499
          Length = 479

 Score = 34.7 bits (76), Expect = 0.096
 Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
 Frame = +3

Query: 207 SQARMLPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNXXLDIXRTHDNYRAITSLKAKY 386
           + A + PL    A S  THL Y    + P    L+            D  RA+   KAK 
Sbjct: 49  ADAHLRPLAALDA-SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV---KAKN 104

Query: 387 PGLTVLLSVGGD---------ADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGID 539
             +  +LS+G           A +     +  +     +R AFI + V +A + GFDG+D
Sbjct: 105 AAVKTVLSIGRGGGAGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGFDGLD 164

Query: 540 LALAVPKS 563
           +A   P S
Sbjct: 165 VAWRFPAS 172


>07_03_1783 +
           29480987-29481165,29481526-29481685,29481767-29481862,
           29481948-29482062,29482175-29482337,29482536-29482707,
           29483924-29484013,29484137-29484598,29484675-29485268,
           29485486-29485554,29485810-29485902,29486432-29486677,
           29487277-29487417,29487748-29487828,29487911-29487973,
           29488059-29488166,29488303-29488383,29488474-29488521,
           29488979-29489053,29489973-29490068,29490156-29490236,
           29490295-29490402,29490989-29491033,29491119-29491202,
           29491379-29491482,29491581-29491728
          Length = 1233

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 225 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNXXLDIXRTHDNYRAIT 368
           PL+LDP      H+L  Y   +  TY LV     + +   HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725


>01_07_0025 + 40565296-40565497,40565591-40566075
          Length = 228

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 648 LLIDWRGAEXLLNSMPKRSPGRADLLRLNSWELPGRGQFHR 526
           LL+ +   + +   +P      ADL RL+ W+LPG G   R
Sbjct: 34  LLLHYLRRKVMSRPLPADVIPVADLARLHPWDLPGEGDGER 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,391,156
Number of Sequences: 37544
Number of extensions: 385300
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)