Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O19
         (840 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212; Eukar...    63   7e-09
UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorc...    52   2e-05
UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3; ...    49   1e-04
UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6; Eukar...    46   9e-04
UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2; ...    45   0.002
UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal pr...    40   0.10 
UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24, puta...    39   0.14 
UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6; Eukaryo...    38   0.41 
UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containin...    35   2.2  
UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1; Ostreoc...    35   2.9  

>UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212;
           Eukaryota|Rep: 40S ribosomal protein S24 - Homo sapiens
           (Human)
          Length = 133

 Score = 63.3 bits (147), Expect = 7e-09
 Identities = 37/82 (45%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTP-MXCSYSVSKKXXXGXVXGFXLXXXXX 343
           RKQMV DVLHPGK TV  TEIREKLA MYK TP +   +        G   GF +     
Sbjct: 20  RKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKTTGFGMIYDSL 79

Query: 344 XXAKXFXPXXXFXPPGXXKKKK 409
             AK   P       G  +KKK
Sbjct: 80  DYAKKNEPKHRLARHGLYEKKK 101


>UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorchis
           sinensis|Rep: 40S ribosomal protein S24 - Clonorchis
           sinensis
          Length = 139

 Score = 52.0 bits (119), Expect = 2e-05
 Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTP-MXCSYSVSKKXXXGXVXGFXLXXXXX 343
           R+QMV D+LHPG+  +S  +IRE+LA  YK +P M  ++        G   GF L     
Sbjct: 20  RRQMVVDILHPGRCVLSLKDIRERLAKTYKTSPDMVFAFGFRTHFGGGKSTGFALVYDSL 79

Query: 344 XXAKXFXP 367
             AK F P
Sbjct: 80  DHAKKFEP 87


>UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3;
           Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
           protein S24 - Entamoeba histolytica HM-1:IMSS
          Length = 140

 Score = 49.2 bits (112), Expect = 1e-04
 Identities = 31/85 (36%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXCSY--SVSKKXXXGXVXGFXLXXXX 340
           RKQ+V D+ HPG      TEI+EKLA MYK   +          K   G   GF L    
Sbjct: 23  RKQVVVDIYHPGIVQPKFTEIKEKLAKMYKVKDVQTIVLNGFVTKYGGGKTSGFALIYDT 82

Query: 341 XXXAKXFXPXXXFXPPGXXKKKKXP 415
               K F P       G  KK K P
Sbjct: 83  LSALKKFVPKHQLIRAGLDKKTKAP 107


>UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6;
           Eukaryota|Rep: 40S ribosomal protein S24-2 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 133

 Score = 46.4 bits (105), Expect = 9e-04
 Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMY--KXTPMXCSYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V DVLHPG+  VS  E++EKLA MY  K       +        G   G+ L    
Sbjct: 21  RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDT 80

Query: 341 XXXAKXFXP 367
              AK F P
Sbjct: 81  VENAKKFEP 89


>UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 166

 Score = 45.2 bits (102), Expect = 0.002
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V +VLHPG+  VS  +++EKLA +Y+     C   +        G   GF L    
Sbjct: 25  RKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDN 84

Query: 341 XXXAKXFXP 367
              AK + P
Sbjct: 85  LDAAKKYEP 93


>UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal
           protein S19; n=1; Xenopus laevis|Rep: Fragment of
           Xenopus laevis ribosomal protein S19 - Xenopus laevis
           (African clawed frog)
          Length = 142

 Score = 39.5 bits (88), Expect = 0.10
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = -3

Query: 256 LVHXGELLTDLGLADGXFSWM*NIANHLLARQQFCCS*TCECXISRC 116
           LVH  +L +D  L D  F+WM  I +HLLA Q+  C     C  S C
Sbjct: 87  LVHLCQLFSDFSLGDSSFAWMKYINDHLLALQKSVCH-KLSCSDSHC 132


>UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24,
           putative; n=1; Plasmodium falciparum 3D7|Rep: 40S
           ribosomal subunit protein S24, putative - Plasmodium
           falciparum (isolate 3D7)
          Length = 133

 Score = 39.1 bits (87), Expect = 0.14
 Identities = 15/30 (50%), Positives = 22/30 (73%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYK 256
           RKQ   ++LHP K +V+  E++E+LA MYK
Sbjct: 20  RKQFALEILHPNKGSVAKKEVKERLAKMYK 49


>UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6;
           Eukaryota|Rep: 40s ribosomal protein s24 -
           Cryptosporidium parvum Iowa II
          Length = 159

 Score = 37.5 bits (83), Expect = 0.41
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC 274
           RKQ V DV+HP    VS ++++ KLA +YK     C
Sbjct: 47  RKQFVVDVIHPSLGGVSKSDLKAKLAKLYKVQDANC 82


>UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containing
           protein; n=1; Tetrahymena thermophila SB210|Rep:
           Ribosomal protein S24e containing protein - Tetrahymena
           thermophila SB210
          Length = 149

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPM-XCSYSVSKKXXXGXVXGFXL 328
           R+Q+  DVLHP   T S  +IRE+LA   K        Y  S +   G   GF L
Sbjct: 18  RRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFAL 72


>UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1;
           Ostreococcus tauri|Rep: 40S ribosomal protein S24 -
           Ostreococcus tauri
          Length = 134

 Score = 34.7 bits (76), Expect = 2.9
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
 Frame = +2

Query: 170 KQMVCDVLHPGKXTVS--------XTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXG 319
           +  +CDVLHPG+  VS          E++EK+A MY  +   C   +        G   G
Sbjct: 20  QSQICDVLHPGRANVSKVRYIRGAGAELQEKIAKMYNVSDEKCVSIFGFRTAFGGGKSTG 79

Query: 320 FXLXXXXXXXAKXFXP 367
           F L        K F P
Sbjct: 80  FGLIYDNIDAFKKFEP 95


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 404,535,798
Number of Sequences: 1657284
Number of extensions: 5338147
Number of successful extensions: 5332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5257
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 73373641369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)