Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O19
         (840 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    54   3e-08
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    50   3e-07

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 54.0 bits (124), Expect = 3e-08
 Identities = 31/69 (44%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXGFXLXXXX 340
           RKQMV D+LHPGK  +S  EIREKLA MYK T   C  ++ +      G   GF L    
Sbjct: 20  RKQMVVDILHPGKANLSKNEIREKLAQMYK-TDSECVQAFGLRTHFGGGRSTGFALIYDS 78

Query: 341 XXXAKXFXP 367
               K F P
Sbjct: 79  TESMKKFEP 87


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 50.4 bits (115), Expect = 3e-07
 Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC-SYSVSKKXXXGXVXGFXLXXXXX 343
           RKQMV D+LHPGK  +S  ++REKL  MYK       ++ +      G   GF L     
Sbjct: 20  RKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFALIYDDV 79

Query: 344 XXAKXFXP 367
              K F P
Sbjct: 80  EAMKKFEP 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,403,218
Number of Sequences: 5004
Number of extensions: 15290
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)