Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O19
         (840 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526...    46   5e-05
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165...    45   7e-05
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725...    45   7e-05

>01_06_0550 -
           30151494-30151526,30151620-30151706,30152458-30152628,
           30152716-30152757,30152856-30152939
          Length = 138

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V +V+HPG+  VS  E++EKLA +Y+     C   +        G   GF L    
Sbjct: 25  RKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFGGGKSTGFGLIYDN 84

Query: 341 XXXAKXFXP 367
              AK + P
Sbjct: 85  LDAAKKYEP 93


>06_03_0440 +
           20815528-20815653,20815742-20815912,20816501-20816584,
           20818831-20818917,20819044-20819076
          Length = 166

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V +VLHPG+  VS  +++EKLA +Y+     C   +        G   GF L    
Sbjct: 25  RKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDN 84

Query: 341 XXXAKXFXP 367
              AK + P
Sbjct: 85  LDAAKKYEP 93


>02_02_0153 -
           7258002-7258034,7258137-7258223,7258991-7259161,
           7259261-7259386
          Length = 138

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTPMXC--SYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V +VLHPG+  VS  +++EKLA +Y+     C   +        G   GF L    
Sbjct: 25  RKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLIYDN 84

Query: 341 XXXAKXFXP 367
              AK + P
Sbjct: 85  LDAAKKYEP 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,367,339
Number of Sequences: 37544
Number of extensions: 211896
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)