Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O19
         (840 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...    58   6e-09
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    32   0.58 

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 32/84 (38%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMYKXTP-MXCSYSVSKKXXXGXVXGFXLXXXXX 343
           RKQMV +V+HPG+ TV   +IREK+A +YK TP     +    K   G   GF L     
Sbjct: 20  RKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIGGGKSKGFALVYDTI 79

Query: 344 XXAKXFXPXXXFXPPGXXKKKKXP 415
             AK F P       G   K + P
Sbjct: 80  DFAKKFEPKYRLVRMGLATKVEKP 103


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 176 MVCDVLHPGKXTVSXTEIREKLAXMYKXTP 265
           MV +V+ PG+ T    +IREK+A  Y   P
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINP 30


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,311,403
Number of Sequences: 27780
Number of extensions: 143988
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)