Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O19
         (840 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    47   1e-05
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    46   2e-05

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/69 (40%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMY--KXTPMXCSYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V DVLHPG+  VS  E++EKLA MY  K       +        G   GF L    
Sbjct: 21  RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDT 80

Query: 341 XXXAKXFXP 367
              AK F P
Sbjct: 81  VESAKKFEP 89


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/69 (39%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 167 RKQMVCDVLHPGKXTVSXTEIREKLAXMY--KXTPMXCSYSVSKKXXXGXVXGFXLXXXX 340
           RKQ V DVLHPG+  VS  E++EKLA MY  K       +        G   G+ L    
Sbjct: 21  RKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDT 80

Query: 341 XXXAKXFXP 367
              AK F P
Sbjct: 81  VENAKKFEP 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,780,435
Number of Sequences: 28952
Number of extensions: 137319
Number of successful extensions: 186
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)