Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O16
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    27   2.7  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   3.6  
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    26   8.2  
SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   8.2  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 CVLISASXCHVFCLSSCRC 188
           CVL+    CH+ CLS  +C
Sbjct: 496 CVLLGEIRCHIGCLSCTKC 514


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 441 DSWLKYWAEXYPFAERQKFLNQY 509
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 23/90 (25%), Positives = 41/90 (45%)
 Frame = +3

Query: 243 MPQLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFKYG 422
           +P L L++     E   ++D    PF ++ S+    +L  R KKR+P  PP +G+   Y 
Sbjct: 68  LPNLMLQDRSNSLERCMEEDREHNPF-LSSSDN---QLLSR-KKRKPTPPPSDGL--YYV 120

Query: 423 FNSKQLDSWLKYWAEXYPFAERQKFLNQYP 512
           F  K++    +   +   F  +  F +  P
Sbjct: 121 FRGKRIKKSFRPGTDLSTFKPKLLFADSAP 150


>SPAC589.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 346

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 566 WSNPHEVNXQTLDISLEMRILVKELLPFSEW 474
           W N HE++ +T D+S    I + ++L FS W
Sbjct: 46  WQN-HELHPKTRDVSTLDWIFLVDILNFSFW 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,287,646
Number of Sequences: 5004
Number of extensions: 63934
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)