Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O16
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1329 + 36354340-36354493,36355781-36355942,36356279-363564...    33   0.40 
09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    31   0.93 
03_05_0464 - 24585422-24585441,24585585-24585690,24585779-245859...    29   3.8  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    29   5.0  
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779...    28   8.7  
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072...    28   8.7  

>01_06_1329 +
           36354340-36354493,36355781-36355942,36356279-36356457,
           36356719-36356918,36356938-36357014,36357110-36357111,
           36357594-36357701,36357806-36358024,36358167-36358448
          Length = 460

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +2

Query: 605 TPWMAGALSGSSTKPF--LISQLSAKTGTLLWKLSLQVYLVMAFP 733
           T + AGAL G+S KPF   +SQL AK+G L   +S++++  +  P
Sbjct: 43  TIYSAGALRGASVKPFGSFVSQLYAKSGDL--DVSVELFNALNLP 85


>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 619 RGSVREFYEAIPHLTAVSXDRNFALEIIAPSLPGYG 726
           +G VR+ YE+  HL  V+ DR  A + +  S+P  G
Sbjct: 22  KGKVRDVYESGEHLVLVTTDRQSAFDRVLASIPFKG 57


>03_05_0464 -
           24585422-24585441,24585585-24585690,24585779-24585926,
           24586017-24586144,24586804-24586939,24587711-24587895
          Length = 240

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 564 PXVPKGVEIVPLLLLHGWPGLCQGVL 641
           P V  G+E VPL ++HG   +C G L
Sbjct: 187 PFVSSGLEFVPLPVMHGEGNICLGFL 212


>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = +3

Query: 204 YHCTSSXLKSPPPMPQLDLEEWWGPPELKQKQDTSIKPFEITFSETM-VKELKERIKKR 377
           + C  S +KS P     ++  WWG    K+ + T+ +    TF   +   E K R K R
Sbjct: 514 FQCVISSVKSCPTCFIFNMPPWWGKSSSKEVKKTAKENLIDTFHRLLSPNEQKGRTKSR 572


>04_04_0712 +
           27476319-27476569,27477150-27477402,27477535-27477914,
           27479738-27479864,27479945-27480110,27480221-27480359,
           27481854-27481987,27482087-27482229,27482367-27482565,
           27482688-27483010
          Length = 704

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +1

Query: 610 MDGRGSVREFYEAIPHLTAVSXDRNFALEIIAPSLPGYGFSD 735
           M GR  V EF    P    +S D+  ALE+I P  PG+  SD
Sbjct: 616 MKGRLFV-EFNVEFPESGVLSRDQCRALEMILPPKPGHQLSD 656


>03_05_0466 -
           24602715-24603964,24605762-24605944,24606381-24607286,
           24609446-24609516,24609737-24609846,24610073-24610108,
           24610211-24610278,24610655-24610760,24610850-24610997,
           24611091-24611218,24611319-24611454,24611924-24612072
          Length = 1096

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 564 PXVPKGVEIVPLLLLHGWPGLCQGVL 641
           P V  G+E VPL ++HG   +C G L
Sbjct: 175 PFVSSGLEFVPLPVMHGEDYVCLGFL 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,945,375
Number of Sequences: 37544
Number of extensions: 471663
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)