Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O16
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)                       29   3.8  
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_4268| Best HMM Match : MtrG (HMM E-Value=1.2)
          Length = 542

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 368 QETKTFRPSIRGCWLQIWVQFETVGQLAQILGRRXPI 478
           Q   T  PS +G  L ++++F+T G+  ++ GRR P+
Sbjct: 321 QHAATASPSTQG--LTVYLRFQTAGRPMELSGRRMPV 355


>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
 Frame = +3

Query: 210 CTSSXLKSPPPMPQLDLEEWWG--PPELKQKQDTSIKPFEITFSETMVKELKERI 368
           C +S +++P P+P+LD+ +     P ELK +   S   F   ++  +VKE KER+
Sbjct: 38  CLNSEVETPLPLPELDVGKKTSSLPSELKSRAFESSSVF---YNPYLVKE-KERL 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,018,357
Number of Sequences: 59808
Number of extensions: 481359
Number of successful extensions: 1188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1188
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)