Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O16
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...    98   6e-21
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    75   7e-14
Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical ...    31   1.4  
AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a prote...    29   3.3  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 49/132 (37%), Positives = 80/132 (60%), Gaps = 4/132 (3%)
 Frame = +3

Query: 240 PMPQLDLEE--WWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVG- 410
           P  ++++EE  ++G  + K   +T IKPF++   ++++ +LK R++  R     LE    
Sbjct: 25  PEKEINVEENNYYGSGKAKP-DNTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDD 83

Query: 411 FKYGFNSKQLDSWLKYWAEXYPFAERQKFLNQYPHFKTNIQGLXIHFMRITPXVPKGVE- 587
           F YGFNSKQL     YW   Y + +++  +NQ+P FKT I+GL +HF+ + P  PK  + 
Sbjct: 84  FYYGFNSKQLLKLRDYWLNKYDWRKQEATINQFPQFKTEIEGLQVHFLHVKP--PKSYKN 141

Query: 588 IVPLLLLHGWPG 623
           + P+L+ HGWPG
Sbjct: 142 VKPILVAHGWPG 153



 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
 Frame = +1

Query: 622 GSVREFYEAIPHLTAVSX---DRNFALEIIAPSLPGYGFSDAAVRPG 753
           G+V EFY+ IP LT       D +FA E+IAPS+PGYG+SD   + G
Sbjct: 153 GNVFEFYKFIPLLTDPKKHGIDSDFAFEVIAPSIPGYGWSDQPKKTG 199



 Score = 31.9 bits (69), Expect = 0.63
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 785 KNLMARLGYXXXXVQGGDWG 844
           + LM RLGY    +QGGDWG
Sbjct: 210 RKLMLRLGYNKFYLQGGDWG 229


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 74.9 bits (176), Expect = 7e-14
 Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
 Frame = +3

Query: 237 PPMPQLDLEEWWGPPELKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGVGFK 416
           PP+ ++D +++W   +  +K D +I  F I   E+ V   KE+++  R F P L    + 
Sbjct: 29  PPL-EIDPDDYWKLDD-PEKDDDTIYSFTIDIKESEVSNFKEKLESER-FLPTLYDTNYD 85

Query: 417 YGFNSKQLDSWLKYWAEXYPFAERQKFLNQYPHFKTNIQGLXIHFMRI-TPXVPKGVEIV 593
              N       LK     + + + Q FLN +  +KT I+GL IHF+R+ TP   K   +V
Sbjct: 86  NYLNE------LKQVLLGFNWKQHQHFLNTFKQYKTEIEGLKIHFLRVSTPPKDKKSRVV 139

Query: 594 PLLLLHGWPG 623
           PLL+ HG+PG
Sbjct: 140 PLLIFHGFPG 149



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query: 622 GSVREFYEAIPHLTAVSX-------DRNFALEIIAPSLPGYGFSDAAVRPGLPA 762
           GS  +F++ IP LT  S        +     E+I PSLPG+ FSD   + G  A
Sbjct: 149 GSFWDFFKIIPILTNPSRHGFDFGVEEAIQFEVIVPSLPGFIFSDKPTKQGFNA 202


>Z93782-2|CAB07854.2|  562|Caenorhabditis elegans Hypothetical
           protein R12G8.2 protein.
          Length = 562

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -1

Query: 285 VRAVPTTPPGLAEASAVDSSEXRRYNGMDASTNSGKTISRRRDXLMH 145
           V+ V +T  G + A +VDS E R ++G   S +    I+RRR+ +M+
Sbjct: 469 VKTVRSTSSG-SSAESVDSKEPRGFDGDSDSGSDDGVINRRRNEMMN 514


>AL021474-2|CAA16309.3|  655|Caenorhabditis elegans Hypothetical
           protein Y32F6A.3 protein.
          Length = 655

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -1

Query: 279 AVPTTPPGLAEASAVDSSEXRRYNGMDASTNSGKTISRRR 160
           +VPTTP GLA      S+     N  D++TN G  +SR+R
Sbjct: 534 SVPTTPTGLAAPKTPLSASVSATNEPDSTTN-GTPLSRKR 572


>AC084154-7|AAO91685.1|  304|Caenorhabditis elegans F-box a protein
           protein 74 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 393 PLEGVGFKYGFNSKQLDSWLKYWAEXYPFAERQKFLNQYPHFK 521
           P EG G +  F  +Q      ++ E Y F   +  +NQ+ HFK
Sbjct: 175 PTEGDGIEDLFQLEQFQKSRDFYMESYAFDTTKTSINQFFHFK 217


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 477 FAERQKFLNQYPHFKTNIQGLXIHFMRITPXVPKGVEIVPLL 602
           F + +   N+YP FKT      I F  I   VP  V ++PL+
Sbjct: 562 FEKCRAVTNKYPEFKTTPFDTEIGFADIILQVPLVVAVIPLV 603


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,345,210
Number of Sequences: 27780
Number of extensions: 362179
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)