Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O16
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.40 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   6.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   8.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   8.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.40
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 705 SDNFQSKVPVXADSCEMRNGFVELPDRAPAI 613
           SD    K P   D+ E RNG V  P   PA+
Sbjct: 560 SDECNKKQPSDCDTLEYRNGEVTTPLFTPAV 590


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 126 CQCVLISASXCHVFCLSSCRC 188
           C C    A  C + C + C+C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 574 LKALK*YHFCYSMDGRGSVREFYEAIPH 657
           L A+K Y   Y + G G   E YE IP+
Sbjct: 29  LGAIKGY---YKISGNGKQYEAYEGIPY 53


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 344 HRLTESDLEGFDAGI 300
           +RLT+  L+G+DAG+
Sbjct: 7   YRLTKYLLDGYDAGV 21


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 574 LKALK*YHFCYSMDGRGSVREFYEAIPH 657
           L A+K Y   Y + G G   E YE IP+
Sbjct: 29  LGAIKGY---YKISGNGKQYEAYEGIPY 53


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 480 AERQKFLNQYPHFKTNIQ 533
           A  ++ LN YP F+ N+Q
Sbjct: 637 ASMKENLNVYPEFQENVQ 654


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 285  LKQKQDTSIKPFEITFSETMVKELKERIKKRRPFAPPLEGV 407
            L +  ++S  P +      +   +K++  KRR   P LEGV
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRKEPPWLEGV 1003


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 613 DGRGSVREFYEAIPHLTAVS 672
           DG+ +V EFY A   L +VS
Sbjct: 288 DGKLNVNEFYMAFSKLYSVS 307


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 216 SSXLKSPPPMPQLDLEEWWGPPELKQKQDTSIKP 317
           +S    PP + ++D +E  G  E K+ +   +KP
Sbjct: 684 ASATTPPPQVDEVDDKELSGAEEEKEVEKALLKP 717


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,394
Number of Sequences: 438
Number of extensions: 4384
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)