Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O15
         (884 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related ...    31   1.1  
U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related ...    31   1.1  
AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protei...    31   1.1  
AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protei...    31   1.1  

>U41535-6|AAK67248.1|  482|Caenorhabditis elegans Lin-26 related
           protein 2, isoform b protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 569 PLTSITKIDAPSQXWXXPDRTIKIPGVXPXXAPLXPSPXSDP--CRFTGYLFRXFPLRXS 742
           P++  + +++ S     P   I +P +    APL     SDP   +  G+L R  P+R +
Sbjct: 111 PISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLA 170

Query: 743 VAP 751
            AP
Sbjct: 171 RAP 173


>U41535-5|AAK67252.1|  548|Caenorhabditis elegans Lin-26 related
           protein 2, isoform a protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 569 PLTSITKIDAPSQXWXXPDRTIKIPGVXPXXAPLXPSPXSDP--CRFTGYLFRXFPLRXS 742
           P++  + +++ S     P   I +P +    APL     SDP   +  G+L R  P+R +
Sbjct: 177 PISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLA 236

Query: 743 VAP 751
            AP
Sbjct: 237 RAP 239


>AJ130960-1|CAA10264.1|  482|Caenorhabditis elegans LIR-2B protein
           protein.
          Length = 482

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 569 PLTSITKIDAPSQXWXXPDRTIKIPGVXPXXAPLXPSPXSDP--CRFTGYLFRXFPLRXS 742
           P++  + +++ S     P   I +P +    APL     SDP   +  G+L R  P+R +
Sbjct: 111 PISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLA 170

Query: 743 VAP 751
            AP
Sbjct: 171 RAP 173


>AJ130959-1|CAA10263.1|  548|Caenorhabditis elegans LIR-2A protein
           protein.
          Length = 548

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 569 PLTSITKIDAPSQXWXXPDRTIKIPGVXPXXAPLXPSPXSDP--CRFTGYLFRXFPLRXS 742
           P++  + +++ S     P   I +P +    APL     SDP   +  G+L R  P+R +
Sbjct: 177 PISMSSPMESASSKDSEPQAVISLPTLGATRAPLLSKLLSDPSTSKENGFLLRKEPVRLA 236

Query: 743 VAP 751
            AP
Sbjct: 237 RAP 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,451,169
Number of Sequences: 27780
Number of extensions: 196455
Number of successful extensions: 311
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)