Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O14
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_53951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/21 (66%), Positives = 14/21 (66%)
 Frame = +2

Query: 299 GXXGEKKKKKKXKXXXKKKKK 361
           G  G KKKKKK K   KKKKK
Sbjct: 108 GVAGLKKKKKKKKKKKKKKKK 128


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = +2

Query: 290  KXXGXXGEKKKKKKXKXXXKKKKK 361
            K  G   +KKKKKK K   KKKKK
Sbjct: 1132 KRLGVPKKKKKKKKKKKKKKKKKK 1155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,915,594
Number of Sequences: 59808
Number of extensions: 100434
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)