Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_O11
         (1257 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2; ...    37   1.3  
UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2; Dictyos...    35   5.1  
UniRef50_A4QN64 Cluster: Zgc:162320 protein; n=8; Danio rerio|Re...    28   7.5  

>UniRef50_A4TTL3 Cluster: Putative uncharacterized protein; n=2;
           cellular organisms|Rep: Putative uncharacterized protein
           - Magnetospirillum gryphiswaldense
          Length = 374

 Score = 36.7 bits (81), Expect = 1.3
 Identities = 19/42 (45%), Positives = 19/42 (45%)
 Frame = -2

Query: 581 GGGXGXXPPPXXXXXFFFFXXXFXXPXKXXXXPPPPXGGGGG 456
           GGG    PPP     FFFF   F         PPPP  GGGG
Sbjct: 41  GGGGAPPPPPARRQKFFFFPHFF--------FPPPPRRGGGG 74


>UniRef50_Q8IU42 Cluster: Formin homology protein A; n=2;
           Dictyostelium discoideum|Rep: Formin homology protein A
           - Dictyostelium discoideum (Slime mold)
          Length = 1218

 Score = 34.7 bits (76), Expect = 5.1
 Identities = 17/48 (35%), Positives = 17/48 (35%)
 Frame = +1

Query: 457 PPPPPXGGGGXXXFXXGXXXXXXKKKXXXXXXGGGXXPXPPPPXGXXG 600
           PPPPP  GGG                      GGG  P PPPP    G
Sbjct: 682 PPPPPMTGGGPPPPPPPPPMTGGGPPPPPPPPGGGPPPPPPPPGAKAG 729


>UniRef50_A4QN64 Cluster: Zgc:162320 protein; n=8; Danio rerio|Rep:
           Zgc:162320 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 412

 Score = 27.9 bits (59), Expect(2) = 7.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 553 GGGXXPXPPPPXGXXG 600
           GGG  P PPPP G  G
Sbjct: 204 GGGAPPAPPPPSGGGG 219



 Score = 25.0 bits (52), Expect(2) = 7.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 457 PPPPPXGGGG 486
           PPPPP  GGG
Sbjct: 197 PPPPPPSGGG 206


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 470,072,578
Number of Sequences: 1657284
Number of extensions: 7592709
Number of successful extensions: 16861
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12512
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 127555079085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)